RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RPS10P46783 165 aaKnown RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 CAPZA1P52907 286 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 PER3P56645 1201 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 CLRN1P58418 232 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 CSNK2A1P68400 391 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 IL13RA1P78552 427 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 SF3A2Q15428 464 aaKnown RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 RAB11BQ15907 218 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 SLC22A6Q4U2R8 563 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 TMEM164Q5U3C3 297 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 HSD11B1LQ7Z5J1 315 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 RBM45Q8IUH3 476 aaKnown RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 CSNK2A3Q8NEV1 391 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 C2CD4CQ8TF44 421 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 SMAP2Q8WU79 429 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 SDSLQ96GA7 329 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 PGAM5Q96HS1 289 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 IGSF21Q96ID5 467 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 USB1Q9BQ65 265 aaKnown RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 FAM86C1Q9NVL1 165 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 CLDND1Q9NY35 253 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 EDDM13A0A1B0GTR0 161 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 C1orf226A1L170 272 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 ZNF705FA8MVS1 300 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 DVL2O14641 736 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 ANKRD28O15084 1053 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 MAGEB4O15481 346 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 AKR7A2O43488 359 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 PRKYO43930 277 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 JRKO75564 520 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 ZNF705DP0CH99 300 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 ZNF705BP0CI00 300 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 ARSBP15848 533 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 FUT1P19526 365 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 HRH2P25021 359 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 CSNK1DP48730 415 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 VEGFCP49767 419 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 ACY1Q03154 408 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 ZNF169Q14929 603 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 ZNF750Q32MQ0 723 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 AKR1C8PQ5T2L2 129 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 ENTHD1Q8IYW4 607 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 NATD1Q8N6N6 113 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 SNIP1Q8TAD8 396 aaKnown RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 OR52D1Q9H346 318 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 TCEAL2Q9H3H9 227 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 GABRPO00591 440 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 CRTAPO75718 401 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 IL1AP01583 271 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 PXNP49023 591 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 RIDAP52758 137 aaKnown RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 GK2Q14410 553 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 OR7E24Q6IFN5 339 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 ESPNLQ6ZVH7 1005 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 TMEM173Q86WV6 379 aaPredicted RBP8.17□□□□□ -1.1
RTN3-202ENST00000339997 BBS1Q8NFJ9 593 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 CDS1Q92903 461 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 CAPNS2Q96L46 248 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 AMBRA1Q9C0C7 1298 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 GORASP2Q9H8Y8 452 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 NENFQ9UMX5 172 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 CYP8B1Q9UNU6 501 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 LIPT1Q9Y234 373 aa8.17□□□□□ -1.1
RTN3-202ENST00000339997 UNC13CQ8NB66 2214 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 CACNA1IQ9P0X4 2223 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 BCORQ6W2J9 1755 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 A0A0B4J2A0 478 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 IGKV6-21A0A0C4DH24 114 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 CASC3O15234 703 aaKnown RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 SLC34A2O95436 690 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 OR8G3PP0DMU2 310 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 MAKP20794 623 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ZNF136P52737 540 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ACTC1P68032 377 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ACTA1P68133 377 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 CHRNEQ04844 493 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 TMEM31Q5JXX7 168 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 CTSL3PQ5NE16 218 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 TMEM207Q6UWW9 146 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ZNF783Q6ZMS7 281 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 CSNK1A1LQ8N752 337 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ZNF709Q8N972 641 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 OR5D18Q8NGL1 313 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ARRDC2Q8TBH0 407 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 LINC01599Q8WXQ3 324 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 SEC22CQ9BRL7 303 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 SHPKQ9UHJ6 478 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 SLC6A5Q9Y345 797 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 PCDHGA2Q9Y5H1 932 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 DCCP43146 1447 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 AFDNP55196 1824 aaKnown RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 CDK5RAP2Q96SN8 1893 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ZNF736B4DX44 427 aaPredicted RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 PDGFAP04085 211 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 RNH1P13489 461 aaKnown RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 UGT2B10P36537 528 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 PLCXD2Q0VAA5 305 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 YOD1Q5VVQ6 348 aaPredicted RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 C17orf107Q6ZR85 190 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 CBLL1Q75N03 491 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms