RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 EEF1E1-BLOC1S5C9J1V9 151 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 EEF1E1O43324 174 aaKnown RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 PRKAR1BP31321 381 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ENTPD1P49961 510 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 PSMD7P51665 324 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 PITPNAQ00169 270 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 MVKQ03426 396 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 GPR139Q6DWJ6 353 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 VTCN1Q7Z7D3 282 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ZNF101Q8IZC7 436 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 RNF113BQ8IZP6 322 aaKnown RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 OR8S1Q8NH09 359 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ADAMTS16Q8TE57 1224 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 MENTQ9BUN1 341 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 TMEM181Q9P2C4 612 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 A0A087WV62 115 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 UBE2QL1A1L167 161 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 FIGNL2A6NMB9 653 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 NME4O00746 187 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 MTRF1O75570 445 aaKnown RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 B3GALT4O96024 378 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 FTH1P19P0C7X4 201 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 TACR3P29371 465 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 APOBEC1P41238 236 aaKnown RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 PPICP45877 212 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 AP3S2P59780 193 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 SLC3A1Q07837 685 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 CBX3Q13185 183 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 RAB39AQ14964 217 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 UGT8Q16880 541 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 VASH1Q7L8A9 365 aaPredicted RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 P2RY8Q86VZ1 359 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 FNDC8Q8TC99 324 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 CT55Q8WUE5 264 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 NKD1Q969G9 470 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 CXorf36Q9H7Y0 433 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 LIN28AQ9H9Z2 209 aaKnown RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 VAPAQ9P0L0 249 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 NEU3Q9UQ49 428 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 FKBP7Q9Y680 259 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 KCNE1BA0A087WTH5 132 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 GPR171O14626 319 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 FGF17O60258 216 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 KDM4BO94953 1096 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ITGB2P05107 769 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ADAM8P78325 824 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 AP1ARQ63HQ0 302 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 GPALPP1Q8IXQ4 340 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 TIGD4Q8IY51 512 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 OR51G2Q8NGK0 314 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 OR4K13Q8NH42 304 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 GTF2H4Q92759 462 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 CLDN23Q96B33 292 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 DEFB127Q9H1M4 99 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 GORASP2Q9H8Y8 452 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 DUSP22Q9NRW4 184 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 DHDHQ9UQ10 334 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 AIREO43918 545 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ENTPD6O75354 484 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ALDOCP09972 364 aaKnown RBP9.43□□□□□ -0.9
USP54-201ENST00000339859 C7P10643 843 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ZNF12P17014 697 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 GADD45AP24522 165 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 CBX5P45973 191 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 LAPTM4AQ15012 233 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 ZNF750Q32MQ0 723 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 B3GNT6Q6ZMB0 384 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 AAED1Q7RTV5 226 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 BCORP1Q8N888 145 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 GPR78Q96P69 363 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 DIABLOQ9NR28 239 aa9.43□□□□□ -0.9
USP54-201ENST00000339859 MICAL3Q7RTP6 2002 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 SAGE2PA6NJ88 616 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 A6NLC8 198 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 UBFD1O14562 309 aaKnown RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 GREM1O60565 184 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 OSMP13725 252 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 PIGGQ5H8A4 983 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 PM20D2Q8IYS1 436 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 CLIP4Q8N3C7 705 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 TMEM102Q8N9M5 508 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 OR8J1Q8NGP2 316 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 OR13C3Q8NGS6 347 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 HMGCLL1Q8TB92 370 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 BPIFA2Q96DR5 249 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 COX4I2Q96KJ9 171 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 DCAF13Q9NV06 445 aaKnown RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 A0A087WZY1 265 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 F8A1P23610 371 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 EVI2BP34910 448 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 BSGP35613 385 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 CDKN2CP42773 168 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 BTG2P78543 158 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 CHRNEQ04844 493 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 USP43Q70EL4 1123 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 JAGN1Q8N5M9 183 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 SLC15A4Q8N697 577 aa9.42□□□□□ -0.9
USP54-201ENST00000339859 HOXB13Q92826 284 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 CPPED1Q9BRF8 314 aaPredicted RBP9.42□□□□□ -0.9
USP54-201ENST00000339859 WASF3Q9UPY6 502 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms