RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CISD2Q8N5K1 135 aaKnown RBP20.17■□□□□ 0.82
SDC3-202ENST00000339394 OR52E4Q8NGH9 312 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 OR5W2Q8NH69 310 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 NSMCE2Q96MF7 247 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 WFDC6Q9BQY6 131 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 ADPRHL2Q9NX46 363 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 SLC13A4Q9UKG4 626 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 BAG5Q9UL15 447 aa20.17■□□□□ 0.82
SDC3-202ENST00000339394 SPTA1P02549 2419 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 ZFYVE26Q68DK2 2539 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 ACOT7O00154 380 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 SYT5O00445 386 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 ACOT8O14734 319 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 FRS3O43559 492 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 ZNF682O95780 498 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 GKN3PP0CG01 181 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 GDF1P27539 372 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 RYKP34925 604 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 CCR4P51679 360 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 TRAP1Q12931 704 aaKnown RBP20.16■□□□□ 0.82
SDC3-202ENST00000339394 ARSKQ6UWY0 536 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 TOR1AIP2Q8NFQ8 470 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 UTP4Q969X6 686 aaKnown RBP20.16■□□□□ 0.82
SDC3-202ENST00000339394 C1GALT1C1Q96EU7 318 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 TPD52L3Q96J77 140 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 KLHL28Q9NXS3 571 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 POMPQ9Y244 141 aa20.16■□□□□ 0.82
SDC3-202ENST00000339394 NINQ8N4C6 2090 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 NUDT14O95848 222 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 ATP6V1B2P21281 511 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 DSCR4P56555 118 aaPredicted RBP20.15■□□□□ 0.82
SDC3-202ENST00000339394 CBFBQ13951 182 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 LCN8Q6JVE9 175 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 VTCN1Q7Z7D3 282 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 EID3Q8N140 333 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 GPR119Q8TDV5 335 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 LZICQ8WZA0 190 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 SLC35B4Q969S0 331 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 RPS6KA6Q9UK32 745 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 NTNG1Q9Y2I2 539 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 SH3GLB1Q9Y371 365 aa20.15■□□□□ 0.82
SDC3-202ENST00000339394 EML6Q6ZMW3 1958 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 ANKUB1A6NFN9 424 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 CFAP73A6NFT4 308 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 CDC40O60508 579 aaKnown RBP eCLIP20.14■□□□□ 0.81
SDC3-202ENST00000339394 CRYABP02511 175 aaKnown RBP20.14■□□□□ 0.81
SDC3-202ENST00000339394 PRG2P13727 222 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 DPP4P27487 766 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 ACAA2P42765 397 aaKnown RBP20.14■□□□□ 0.81
SDC3-202ENST00000339394 SUMO3P55854 103 aaPredicted RBP20.14■□□□□ 0.81
SDC3-202ENST00000339394 TOMM20Q15388 145 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 TOMM34Q15785 309 aaPredicted RBP20.14■□□□□ 0.81
SDC3-202ENST00000339394 FAM180AQ6UWF9 173 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 ZNF550Q7Z398 422 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 ZNF440Q8IYI8 595 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 FAM109AQ8N4B1 249 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 PROX1Q92786 737 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 ZNF524Q96C55 264 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 SNRNP40Q96DI7 357 aaKnown RBP20.14■□□□□ 0.81
SDC3-202ENST00000339394 RNF145Q96MT1 663 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 ZDHHC11Q9H8X9 412 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 ANAPC2Q9UJX6 822 aa20.14■□□□□ 0.81
SDC3-202ENST00000339394 SAMD4AQ9UPU9 718 aaKnown RBP20.14■□□□□ 0.81
SDC3-202ENST00000339394 TTLL8A6PVC2 850 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 M0R3H8 397 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 TFECO14948 347 aaPredicted RBP20.13■□□□□ 0.81
SDC3-202ENST00000339394 ZIC3O60481 467 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 TRAPPC6AO75865 159 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 CELA3AP09093 270 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 LINGO3P0C6S8 592 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 SRD5A2P31213 254 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 HOXC5Q00444 222 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 ALDH6A1Q02252 535 aaKnown RBP20.13■□□□□ 0.81
SDC3-202ENST00000339394 EPS8Q12929 822 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 GANABQ14697 944 aaKnown RBP20.13■□□□□ 0.81
SDC3-202ENST00000339394 NRF1Q16656 503 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 PRR30Q53SZ7 412 aaPredicted RBP20.13■□□□□ 0.81
SDC3-202ENST00000339394 LACC1Q8IV20 430 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 ARHGDIGQ99819 225 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 TSPAN10Q9H1Z9 355 aaPredicted RBP20.13■□□□□ 0.81
SDC3-202ENST00000339394 OLAHQ9NV23 265 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 QPCTLQ9NXS2 382 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 VDAC3Q9Y277 283 aa20.13■□□□□ 0.81
SDC3-202ENST00000339394 ERICH4A6NGS2 130 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 AP3D1O14617 1153 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 WISP2O76076 250 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 PRKD3O94806 890 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 STAMBPO95630 424 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 HPNP05981 417 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 TNFRSF1BP20333 461 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 OR1E2P47887 323 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 SLC6A8P48029 635 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 ZNF136P52737 540 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 RGS8P57771 180 aaPredicted RBP20.12■□□□□ 0.81
SDC3-202ENST00000339394 FLOT2Q14254 428 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 SLC10A1Q14973 349 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 FKBP9P1Q75LS8 142 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 SIAH3Q8IW03 269 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 FAM86B1Q8N7N1 296 aa20.12■□□□□ 0.81
SDC3-202ENST00000339394 FAM83FQ8NEG4 500 aaPredicted RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms