RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CTXN1P60606 82 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GAB1Q13480 694 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TBCEQ15813 527 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MRPL2Q5T653 305 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 FAM69BQ5VUD6 431 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 FBXO42Q6P3S6 717 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SLCO6A1Q86UG4 719 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 CCDC103Q8IW40 242 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 B3GNT7Q8NFL0 401 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 HRASLS5Q96KN8 279 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 UTP23Q9BRU9 249 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 RAB33BQ9H082 229 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MMP27Q9H306 513 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 LDAHQ9H6V9 325 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SIAEQ9HAT2 523 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 ELL3Q9HB65 397 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SNTG1Q9NSN8 517 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 RHCGQ9UBD6 479 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TLN2Q9Y4G6 2542 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 PIEZO2Q9H5I5 2752 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 UBE2QL1A1L167 161 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 KLRC4-KLRK1H3BQV0 150 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 LRRTM2O43300 516 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 XPNPEP2O43895 674 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GGT2P36268 569 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 RHAGQ02094 409 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TFF2Q03403 129 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 HSF2Q03933 536 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MESP2Q0VG99 397 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 BNIP3Q12983 259 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 EXOSC7Q15024 291 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GPR19Q15760 415 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SLC35F1Q5T1Q4 408 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SLC6A19Q695T7 634 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 RIMKLAQ8IXN7 391 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GATSQ8NAP1 163 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 FANK1Q8TC84 345 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SLC2A12Q8TD20 617 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 DIRAS2Q96HU8 199 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SLC41A2Q96JW4 573 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 KLHL15Q96M94 604 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 PCDHGA1Q9Y5H4 931 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 A0A1B0GWA3 101 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 CDC40O60508 579 aaKnown RBP eCLIP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 DPM1O60762 260 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 DLGAP3O95886 979 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 CH25HO95992 272 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ALPLP05186 524 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 EIF2S3P41091 472 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 RBM34P42696 430 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 CYB561P49447 251 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SSR4P51571 173 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF57Q68EA5 555 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 BORAQ6PGQ7 559 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 PAPD5Q8NDF8 572 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 PHYHIPQ92561 330 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 FN3KQ9H479 309 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 POLHQ9Y253 713 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SLC6A5Q9Y345 797 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 LOC285556D6RIA3 1793 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 A0A1B0GVI7 797 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 LCMT2O60294 686 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF883P0CG24 379 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 OR1D5P58170 312 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SLC14A1Q13336 389 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 E2F2Q14209 437 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 LINC00299Q6ZSB3 139 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF367Q7RTV3 350 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 CPOQ8IVL8 374 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 OR14L1PQ8NHC6 308 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 TSEN15Q8WW01 171 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 C11orf24Q96F05 449 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ADAD1Q96M93 576 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF385DQ9H6B1 395 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 DNAJC27Q9NZQ0 273 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SHISA7A6NL88 538 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SLC1A7O00341 560 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 CTSVO60911 334 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ATP1B1P05026 303 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 MAP3K8P41279 467 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 PDX1P52945 283 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 PRTGQ2VWP7 1150 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ALG10Q5BKT4 473 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 OR6T1Q8NGN1 323 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 CDS1Q92903 461 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 TAMM41Q96BW9 452 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 HDHD2Q9H0R4 259 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 INIPQ9NRY2 104 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 PAQR5Q9NXK6 330 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 FARSAQ9Y285 508 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ARPC3O15145 178 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SOD1P00441 154 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SERPINA7P05543 415 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 HTR1AP08908 422 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 APEHP13798 732 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 PRKCAP17252 672 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 DPP4P27487 766 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 GNALP38405 381 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 MEP1AQ16819 746 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF404Q494X3 552 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms