RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PAN3Q58A45 887 aaKnown RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 RPS26P11Q5JNZ5 115 aaPredicted RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 MRPL21Q7Z2W9 205 aaKnown RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 NAA40Q86UY6 237 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 ENTHD1Q8IYW4 607 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 LINC01599Q8WXQ3 324 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 WASH4PA8MWX3 477 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 TK1P04183 234 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 HLA-DOBP13765 273 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 BCKDHBP21953 392 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 DBPQ10586 325 aaPredicted RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 EXOSC6Q5RKV6 272 aaKnown RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 OR52W1Q6IF63 320 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 VASH1Q7L8A9 365 aaPredicted RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 KLHDC7BQ96G42 594 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 INPP5KQ9BT40 448 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 SDR39U1Q9NRG7 319 aaPredicted RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 DZANK1Q9NVP4 752 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 CNIH4Q9P003 139 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 LTBQ06643 244 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 TBCEQ15813 527 aaPredicted RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 ADAMTS16Q8TE57 1224 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 PSD2Q9BQI7 771 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 CWH43Q9H720 699 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 URB1O60287 2271 aaKnown RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 TMEM82A0PJX8 343 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 RNASET2O00584 256 aaKnown RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 SORDQ00796 357 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 OPCMLQ14982 345 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 MPEG1Q2M385 716 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 HIST2H3AQ71DI3 136 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 DPPA2Q7Z7J5 298 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 RHOXF1Q8NHV9 184 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 THAP3Q8WTV1 239 aaPredicted RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 SLC2A13Q96QE2 648 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 NIPAL2Q9H841 368 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 GORASP2Q9H8Y8 452 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 ACKR4Q9NPB9 350 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 EHFQ9NZC4 300 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 EIF3FO00303 357 aaPredicted RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 CRHBPP24387 322 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 SLC22A6Q4U2R8 563 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 EEF1A1P5Q5VTE0 462 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 PRAMEF8Q5VWM4 474 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 PRAMEF7Q5VXH5 474 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 MCOLN1Q9GZU1 580 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 CSNK1G3Q9Y6M4 447 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF541Q9H0D2 1346 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 FZD7O75084 574 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 NFYBP25208 207 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 GABRA5P31644 462 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 MAP4K2Q12851 820 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 P2RY14Q15391 338 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 TMEM244Q5VVB8 128 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 RNF170Q96K19 258 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 FAM71F1Q96KD3 344 aaPredicted RBP13.07□□□□□ -0.32
CSPG4-201ENST00000308508 DPH7Q9BTV6 452 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 CDH20Q9HBT6 801 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 ANGPTL7O43827 346 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 LEFTY1O75610 366 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 FCRLBQ6BAA4 426 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 Q6ZVL8 140 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 HOXB5P09067 269 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 TGM4P49221 684 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 RAB28P51157 221 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 COMMD6Q7Z4G1 85 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 FAM58AQ8N1B3 248 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 NTN4Q9HB63 628 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 CUTCQ9NTM9 273 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 A0A1B0GVG6 124 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 LRP5LA4QPB2 252 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 TNFRSF1BP20333 461 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 CNR1P21554 472 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 DEFB115Q30KQ5 88 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 ATPAF1Q5TC12 328 aaPredicted RBP13.07□□□□□ -0.32
CSPG4-201ENST00000308508 FBXW12Q6X9E4 464 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 CDHR3Q6ZTQ4 885 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 HHIPL1Q96JK4 782 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 A0A087WZY1 265 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 WTIPA6NIX2 430 aaPredicted RBP13.07□□□□□ -0.32
CSPG4-201ENST00000308508 ICMTO60725 284 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 MMP2P08253 660 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 JMJD7P0C870 316 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 APLNRP35414 380 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 RPS18P62269 152 aaKnown RBP13.07□□□□□ -0.32
CSPG4-201ENST00000308508 OR6V1Q8N148 313 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 OR52H1Q8NGJ2 320 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 OR51L1Q8NGJ5 315 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 SLC6A17Q9H1V8 727 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 BTNL2Q9UIR0 455 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 SOWAHBA6NEL2 793 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 ADAM12O43184 909 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 LAMP1P11279 417 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 ZNF300Q96RE9 604 aaPredicted RBP13.07□□□□□ -0.32
CSPG4-201ENST00000308508 CENPOQ9BU64 300 aa13.07□□□□□ -0.32
CSPG4-201ENST00000308508 A8MVM7 634 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 P04436 131 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 GABRB3P28472 473 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 TPMTP51580 245 aa13.06□□□□□ -0.32
CSPG4-201ENST00000308508 NDUFA6P56556 154 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms