RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 B3GNT2Q9NY97 397 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 DKKL1Q9UK85 242 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 PCDHGA6Q9Y5G7 932 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 A0A1W2PQU0 124 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 GPX2P18283 190 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 TAGLNQ01995 201 aaKnown RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 CDC20Q12834 499 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 RBMS2Q15434 407 aaKnown RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 INAVAQ3KP66 663 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SLC35F3Q8IY50 421 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 PGBD5Q8N414 524 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SMIM14Q96QK8 99 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 OR7D2Q96RA2 312 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 CTRCQ99895 268 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 KLF16Q9BXK1 252 aaPredicted RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 AMBRA1Q9C0C7 1298 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 POLHQ9Y253 713 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 ZNF443Q9Y2A4 671 aaPredicted RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SNX11Q9Y5W9 270 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 NUP98P52948 1817 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 TMEM189-UBE2V1I3L0A0 370 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 BPNT1O95861 308 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 TCRBP04435 133 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 MECP2P51608 486 aaKnown RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 RAB33AQ14088 237 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 MBTPS1Q14703 1052 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 FCN2Q15485 313 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 MARCH8Q5T0T0 291 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 TMEM25Q86YD3 366 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 LMX1AQ8TE12 382 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 PAQR8Q8TEZ7 354 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 MYLIPQ8WY64 445 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 CDS1Q92903 461 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 KHSRPQ92945 711 aaKnown RBP eCLIP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 HHATLQ9HCP6 504 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 OSGIN1Q9UJX0 560 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 RNF215Q9Y6U7 377 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 DCDC2BA2VCK2 349 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 NPIPA2E9PIF3 369 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 NPIPA3F8WFD2 350 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 C1orf105O95561 183 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 CRABP1P29762 137 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 HOXC13P31276 330 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 PSPHP78330 225 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 EIF2B1Q14232 305 aaKnown RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 P2RY14Q15391 338 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 TCTE1Q5JU00 501 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 DCST2Q5T1A1 773 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 HENMT1Q5T8I9 393 aaKnown RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 SBSNQ6UWP8 590 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 STEAP2Q8NFT2 490 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 FOXRED1Q96CU9 486 aaPredicted RBP12.06□□□□□ -0.48
COL3A1-201ENST00000304636 DNAJA3Q96EY1 480 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 BORCS8Q96FH0 119 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 NIPSNAP1Q9BPW8 284 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 KCNJ16Q9NPI9 418 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 C1GALT1Q9NS00 363 aa12.06□□□□□ -0.48
COL3A1-201ENST00000304636 TRDV1A0A1B0GX56 115 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 IL1RNP18510 177 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 ARL3P36405 182 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 GDNFP39905 211 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 CASRP41180 1078 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 HOXC5Q00444 222 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 GPR50Q13585 617 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 AKR1C8PQ5T2L2 129 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 ZNF585AQ6P3V2 769 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 VRK2Q86Y07 508 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 PITX2Q99697 317 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 IL21RQ9HBE5 538 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 ENY2Q9NPA8 101 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 HEXBP07686 556 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 GAAP10253 952 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 LUMP51884 338 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 SNRPGP62308 76 aaKnown RBP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 GALK2Q01415 458 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 LTBQ06643 244 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 DYRK1AQ13627 763 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 CTU2Q2VPK5 515 aaKnown RBP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 MPP7Q5T2T1 576 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 SFXN4Q6P4A7 337 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 ALKAL2Q6UX46 152 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 SGPP2Q8IWX5 399 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 BOLLQ8N9W6 283 aaKnown RBP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 SLC38A5Q8WUX1 472 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 ZDHHC12Q96GR4 267 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 CAPNS2Q96L46 248 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 GABARAPL1Q9H0R8 117 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 GALNT9Q9HCQ5 603 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 LSM5Q9Y4Y9 91 aaKnown RBP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 POM121CA8CG34 1229 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 HNRNPA1P09651 372 aaKnown RBP eCLIP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 PRLHRP49683 370 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 BTG1P62324 171 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 NKX6-1P78426 367 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 OC90Q02509 493 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 DHRS4L2Q6PKH6 230 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 TSSK4Q6SA08 328 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 FCRLAQ7L513 359 aa12.05□□□□□ -0.48
COL3A1-201ENST00000304636 RNF113BQ8IZP6 322 aaKnown RBP12.05□□□□□ -0.48
COL3A1-201ENST00000304636 ESX1Q8N693 406 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms