RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PEX14O75381 377 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 ILKQ13418 452 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 THAP4Q8WY91 577 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 C4orf36Q96KX1 117 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 CDCA3Q99618 268 aaPredicted RBP14.4□□□□□ -0.1
SHH-201ENST00000297261 DPH7Q9BTV6 452 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 ZNF416Q9BWM5 594 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 FBXL2Q9UKC9 423 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 TEX13DA0A0J9YY54 714 aaPredicted RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 GXYLT2A0PJZ3 443 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 KRBOX1C9JBD0 128 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 PPM1BO75688 479 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 IFNA21P01568 189 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 CSF3P09919 207 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 AKT2P31751 481 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 SOX9P48436 509 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 ALG11Q2TAA5 492 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 FCRL1Q96LA6 429 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 A0A1W2PQU0 124 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 NAT1P18440 290 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 SRP9P49458 86 aaKnown RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 GPLD1P80108 840 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 CTBSQ01459 385 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 RIPPLY1Q0D2K3 151 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 DUSP7Q16829 419 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 C1orf189Q5VU69 101 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 WDR53Q7Z5U6 358 aaPredicted RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 GATSQ8NAP1 163 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 ZNF680Q8NEM1 530 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 SLC38A5Q8WUX1 472 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 SLC25A46Q96AG3 418 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 AHCYL2Q96HN2 611 aaKnown RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 MSLNLQ96KJ4 702 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 DMRT3Q9NQL9 472 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 OR1A2Q9Y585 309 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 UTRNP46939 3433 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 SIP14410 1827 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 SGCEO43556 437 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 PPP1R3DO95685 299 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 AKR1C4P17516 323 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 GABRA3P34903 492 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 DEFB134Q4QY38 66 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 C9orf50Q5SZB4 431 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 SIAH3Q8IW03 269 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 OR4K14Q8NGD5 310 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 CNN2Q99439 309 aaKnown RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 DDOQ99489 341 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 RGCCQ9H4X1 137 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 MYEF2Q9P2K5 600 aaKnown RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 ASPDHA6ND91 283 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 SIX6O95475 246 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 LDOC1O95751 146 aaPredicted RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 PSMB1P20618 241 aaKnown RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 GJA4P35212 333 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 TPMTP51580 245 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 CLDN12P56749 244 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 RAP2BP61225 183 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 RNASE10Q5GAN6 216 aaKnown RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 TOR2AQ5JU69 321 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 OR52I1Q8NGK6 324 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 FOXJ1Q92949 421 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 DTD2Q96FN9 168 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 ACTR10Q9NZ32 417 aa14.39□□□□□ -0.11
SHH-201ENST00000297261 USP36Q9P275 1121 aaKnown RBP14.39□□□□□ -0.11
SHH-201ENST00000297261 OLFM2O95897 454 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 GKN3PP0CG01 181 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 NFYAP23511 347 aaPredicted RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 CD34P28906 385 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 VEGFCP49767 419 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ACTA2P62736 377 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ACTG2P63267 376 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 HTRA4P83105 476 aaPredicted RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 FGL1Q08830 312 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 OLIG3Q7RTU3 272 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 KCTD20Q7Z5Y7 419 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ZNF527Q8NB42 609 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 OR4M1Q8NGD0 313 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ZNF582Q96NG8 517 aaPredicted RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 POLDIP3Q9BY77 421 aaKnown RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 CDCP1Q9H5V8 836 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 FZD3Q9NPG1 666 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 BIN3Q9NQY0 253 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 VEGFDO43915 354 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 CD6P30203 668 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 FRKP42685 505 aaPredicted RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 GPR176Q14439 515 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 PHOSPHO1Q8TCT1 267 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 RAB11FIP5Q9BXF6 653 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 QRSL1Q9H0R6 528 aaKnown RBP14.38□□□□□ -0.11
SHH-201ENST00000297261 MED20Q9H944 212 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ATP13A2Q9NQ11 1180 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 SLC7A7Q9UM01 511 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ANK1P16157 1881 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 RP1P56715 2156 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 ANTXRLA6NF34 631 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 UBXN7O94888 489 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 HLA-DMAP28067 261 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 PRSS3P35030 304 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 GDNFP39905 211 aa14.38□□□□□ -0.11
SHH-201ENST00000297261 RGS19P49795 217 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms