RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 MECP2P51608 486 aaKnown RBP12.84□□□□□ -0.35
SIX4-201ENST00000216513 FXYD6P3P58550 94 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 PLK5Q496M5 336 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 MED25Q71SY5 747 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 ZSWIM9Q86XI8 627 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 AMDHD1Q96NU7 426 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 DPH1Q9BZG8 443 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 DNAJC15Q9Y5T4 150 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 SMCHD1A6NHR9 2005 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 HOXB9P17482 250 aaPredicted RBP12.84□□□□□ -0.35
SIX4-201ENST00000216513 GLP1RP43220 463 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 HSD17B7P56937 341 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 SLC16A14Q7RTX9 510 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 CPEB2Q7Z5Q1 589 aaKnown RBP12.84□□□□□ -0.35
SIX4-201ENST00000216513 LAS2Q8IYD9 372 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 NAGSQ8N159 534 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 MNTQ99583 582 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 ZNF442Q9H7R0 627 aa12.84□□□□□ -0.35
SIX4-201ENST00000216513 MAGED1Q9Y5V3 778 aaPredicted RBP12.84□□□□□ -0.35
SIX4-201ENST00000216513 MYO10Q9HD67 2058 aa12.83□□□□□ -0.35
SIX4-201ENST00000216513 UTS2O95399 124 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 CDKL4Q5MAI5 379 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 PRAMEF17Q5VTA0 474 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 NEDD4LQ96PU5 975 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 SUSD5O60279 629 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 RAD51DO75771 328 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 WNT11O96014 354 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 NKX2-5P52952 324 aaPredicted RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 HERV-K104P61576 105 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 ARF1P84077 181 aaKnown RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 OR5L1Q8NGL2 311 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 C12orf43Q96C57 262 aaKnown RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 PINK1Q9BXM7 581 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 GMPR2Q9P2T1 348 aaKnown RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 METTL21EPA6NDL7 271 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 MAS1P04201 325 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 FUT1P19526 365 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 ACADVLP49748 655 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 YOD1Q5VVQ6 348 aaPredicted RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 MARCH3Q86UD3 253 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 ZNF227Q86WZ6 799 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 NUDT8Q8WV74 236 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 PPP1R14BQ96C90 147 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 METTL2AQ96IZ6 378 aaKnown RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 FAM71F1Q96KD3 344 aaPredicted RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 ZNF701Q9NV72 531 aaPredicted RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 ZNF639Q9UID6 485 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 USP22Q9UPT9 525 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 CLCA1A8K7I4 914 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 ACTL6BO94805 426 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 EIF2B1Q14232 305 aaKnown RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 SLC18B1Q6NT16 456 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 LSM14AQ8ND56 463 aaKnown RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 NETO1Q8TDF5 533 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 KCNN1Q92952 543 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 ACPTQ9BZG2 426 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 NXF5Q9H1B4 397 aaKnown RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 K7EQS6 105 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 FAAHO00519 579 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 E2F3O00716 465 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 DSCR3O14972 297 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 CEACAM5P06731 702 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 MMP2P08253 660 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 SP9P0CG40 484 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 DPTQ07507 201 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 SIX1Q15475 284 aaPredicted RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 RSPO4Q2I0M5 234 aaPredicted RBP12.83□□□□□ -0.36
SIX4-201ENST00000216513 KHDC1LQ5JSQ8 128 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 RPL13AP3Q6NVV1 102 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 SLC22A25Q6T423 547 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 C8orf4Q9NR00 106 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 ZNF226Q9NYT6 803 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 KCNIP1Q9NZI2 227 aa12.83□□□□□ -0.36
SIX4-201ENST00000216513 GNG2P59768 71 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 C17orf67Q0P5P2 114 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 RSU1Q15404 277 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 KCTD11Q693B1 232 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 THOC7Q6I9Y2 204 aaKnown RBP12.82□□□□□ -0.36
SIX4-201ENST00000216513 PLEKHG7Q6ZR37 379 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 SLC46A3Q7Z3Q1 461 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 OR2T4Q8NH00 348 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 L3HYPDHQ96EM0 354 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 MICU1Q9BPX6 476 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 EBF1Q9UH73 591 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 KLHL21Q9UJP4 597 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 WIF1Q9Y5W5 379 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 MEIS3P1A6NDR6 274 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 ZNF264O43296 627 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 CBFA2T3O75081 653 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 CSNK1G2P78368 415 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 REEP5Q00765 189 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 CAMK2DQ13557 499 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 C22orf42Q6IC83 251 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 SLC27A4Q6P1M0 643 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 ARHGAP11AQ6P4F7 1023 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 ZNF534Q76KX8 674 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 TMEM17Q86X19 198 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 ZNF610Q8N9Z0 462 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 OR9Q2Q8NGE9 314 aa12.82□□□□□ -0.36
SIX4-201ENST00000216513 OR6Q1Q8NGQ2 317 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms