RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 MEX3AA1L020 520 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 A6NJ64 397 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CDRT15L2A8MXV6 281 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 M0QYT0 321 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 AGPAT2O15120 278 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PLRG1O43660 514 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 VTNP04004 478 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CFHP08603 1231 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 OR8U8P0C7N1 319 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF16P17020 682 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PRKAG1P54619 331 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PJVKQ0ZLH3 352 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GTF2H2Q13888 395 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SSX1Q16384 188 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TDRD10Q5VZ19 366 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 OR2T2Q6IF00 324 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GTF2H2CQ6P1K8 395 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 OAFQ86UD1 273 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 HORMAD2Q8N7B1 307 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 NETO2Q8NC67 525 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF548Q8NEK5 533 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 OR8J2Q8NGG1 315 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PCDH19Q8TAB3 1148 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 C15orf40Q8WUR7 153 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 EDEM1Q92611 657 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 FUBP1Q96AE4 644 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SMARCD1Q96GM5 515 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF514Q96K75 400 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TEX101Q9BY14 249 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 EIF5A2Q9GZV4 153 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TLNRD1Q9H1K6 362 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PPP1R3EQ9H7J1 279 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 KCNK12Q9HB15 430 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SERINC1Q9NRX5 453 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PLEKHB1Q9UF11 243 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PTGDR2Q9Y5Y4 395 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 LRP6O75581 1613 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TVP23AA6NH52 213 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 NFATC1O95644 943 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SNRPCP09234 159 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SFTA3P0C7M3 94 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ELK1P19419 428 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 MAOAP21397 527 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ITGB7P26010 798 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 NMBRP28336 390 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TM4SF1P30408 202 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 IRS1P35568 1242 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 RAD52P43351 418 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GPR3P46089 330 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TPI1P60174 286 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CXADRP78310 365 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF252P-AS1Q0IIN9 211 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PPIGQ13427 754 aaKnown RBP eCLIP5.39□□□□□ -1.558e-7■■■□□ 17.1
SCN1A-216ENST00000637968 SLC5A12Q1EHB4 618 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 QRICH1Q2TAL8 776 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PRAMEF14Q5SWL7 426 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 IL20RBQ6UXL0 311 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GALNTL5Q7Z4T8 443 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 UBE3DQ7Z6J8 389 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 MAML2Q8IZL2 1156 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GCNT2Q8N0V5 402 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 C11orf42Q8N5U0 333 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CHST14Q8NCH0 376 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 DMBX1Q8NFW5 382 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 MFSD8Q8NHS3 518 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GPBAR1Q8TDU6 330 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 FCAMRQ8WWV6 532 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 DTD2Q96FN9 168 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF558Q96NG5 402 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF385AQ96PM9 386 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 INTS14Q96SY0 518 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 AARSD1Q9BTE6 412 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 URM1Q9BTM9 101 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 MRI1Q9BV20 369 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ELOVL1Q9BW60 279 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 WWTR1Q9GZV5 400 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 TKTL2Q9H0I9 626 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 OSBPL2Q9H1P3 480 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ABHD16BQ9H3Z7 469 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 FNDC3AQ9Y2H6 1198 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PXDNQ92626 1479 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ANKUB1A6NFN9 424 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SNRPGP15A8MWD9 76 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 IGF2P01344 180 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CELP19835 753 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CCND3P30281 292 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 CRYBB2P43320 205 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 GSK3AP49840 483 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ACTBP60709 375 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 PPIAP62937 165 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ACTG1P63261 375 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ARF5P84085 180 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SLC9A3R2Q15599 337 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 IQCJQ1A5X6 159 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ERN2Q76MJ5 926 aaKnown RBP5.39□□□□□ -1.55
SCN1A-216ENST00000637968 ADGRA1Q86SQ6 560 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 SLC51AQ86UW1 340 aa5.39□□□□□ -1.55
SCN1A-216ENST00000637968 Q8NFD4 153 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 346.7 ms