RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLN3-259ENST00000637551 C1orf185Q5T7R7 199 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 RIPPLY2Q5TAB7 128 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 SLC2A7Q6PXP3 512 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 ADGRE4PQ86SQ3 457 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 CLEC4FQ8N1N0 589 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 C10orf82Q8WW14 230 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 ITLN2Q8WWU7 325 aaPredicted RBP16.56■□□□□ 0.24
CLN3-259ENST00000637551 SLC35B4Q969S0 331 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 WDYHV1Q96HA8 205 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 LAT2Q9GZY6 243 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 SLC38A1Q9H2H9 487 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 BCL2L10Q9HD36 194 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 A4GALTQ9NPC4 353 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 SLC6A13Q9NSD5 602 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 PAQR5Q9NXK6 330 aaPredicted RBP16.56■□□□□ 0.24
CLN3-259ENST00000637551 COQ3Q9NZJ6 369 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 MED11Q9P086 117 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 FAM215AQ9Y5M1 114 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 HRH3Q9Y5N1 445 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 GPC6Q9Y625 555 aaPredicted RBP16.56■□□□□ 0.24
CLN3-259ENST00000637551 HEATR5AQ86XA9 2040 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 C2orf72A6NCS6 295 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 AGAP5A6NIR3 686 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 EVPLLA8MZ36 301 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 HCRTR2O43614 444 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 FCMRO60667 390 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 H6PDO95479 791 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 EPPINO95925 133 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 GSNP06396 782 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 GPX2P18283 190 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 HK1P19367 917 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 LHX2P50458 406 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 EEF1A1P68104 462 aaKnown RBP16.55■□□□□ 0.24
CLN3-259ENST00000637551 STX5Q13190 355 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 CD226Q15762 336 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 ACSF3Q4G176 576 aaPredicted RBP16.55■□□□□ 0.24
CLN3-259ENST00000637551 SLC25A53Q5H9E4 307 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 EEF1A1P5Q5VTE0 462 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 NSUN5P2Q63ZY6 315 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 OR5M10Q6IEU7 315 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 DNAJC14Q6Y2X3 702 aaPredicted RBP16.55■□□□□ 0.24
CLN3-259ENST00000637551 YRDCQ86U90 279 aaKnown RBP16.55■□□□□ 0.24
CLN3-259ENST00000637551 OR5W2Q8NH69 310 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 PHOSPHO1Q8TCT1 267 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 RND1Q92730 232 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 RAB8BQ92930 207 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 TTYH2Q9BSA4 534 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 TMEM38AQ9H6F2 299 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 SAR1AQ9NR31 198 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.55■□□□□ 0.24
CLN3-259ENST00000637551 SLC25A37Q9NYZ2 338 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 L3MBTL1Q9Y468 752 aa16.55■□□□□ 0.24
CLN3-259ENST00000637551 A0A0G2JPF8 293 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 HNRNPCL2B2RXH8 293 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 HNRNPCL3B7ZW38 293 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 FAAHO00519 579 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 HNRNPCL1O60812 293 aaKnown RBP16.54■□□□□ 0.24
CLN3-259ENST00000637551 CCDC22O60826 627 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 ZG16O60844 167 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 DBIP07108 87 aaKnown RBP16.54■□□□□ 0.24
CLN3-259ENST00000637551 THBS1P07996 1170 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 TFPTP0C1Z6 253 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 HNRNPCL4P0DMR1 293 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 NR2F1P10589 423 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 POU3F2P20265 443 aaPredicted RBP16.54■□□□□ 0.24
CLN3-259ENST00000637551 CHRNB4P30926 498 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 CRATP43155 626 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 SLC6A8P48029 635 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 CLDN18P56856 261 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 ADORA2A-AS1P86434 159 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 ZNF117Q03924 483 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 SKP2Q13309 424 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 CBFBQ13951 182 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 GPR68Q15743 365 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 PLPPR5Q32ZL2 321 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 GPAT3Q53EU6 434 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 PDZK1Q5T2W1 519 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 RAET1LQ5VY80 246 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 DLEU7Q6UYE1 221 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 MAMDC2Q7Z304 686 aaPredicted RBP16.54■□□□□ 0.24
CLN3-259ENST00000637551 GALNT10Q86SR1 603 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 PEX5LQ8IYB4 626 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 ZNF440Q8IYI8 595 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 ST8SIA1Q92185 356 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 THOC1Q96FV9 657 aaKnown RBP16.54■□□□□ 0.24
CLN3-259ENST00000637551 MRGPRX4Q96LA9 322 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 SPATA9Q9BWV2 254 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 ARMC7Q9H6L4 198 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 MED17Q9NVC6 651 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 MKLN1Q9UL63 735 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 SLC6A5Q9Y345 797 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 CSMD1Q96PZ7 3565 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 DOCK7Q96N67 2140 aa16.54■□□□□ 0.24
CLN3-259ENST00000637551 OR2M5A3KFT3 312 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 PRAMEF27A3QJZ7 478 aa16.53■□□□□ 0.24
CLN3-259ENST00000637551 MBD3L4A6NDZ8 208 aaPredicted RBP16.53■□□□□ 0.24
CLN3-259ENST00000637551 MBD3L3A6NE82 208 aaPredicted RBP16.53■□□□□ 0.24
CLN3-259ENST00000637551 MBD3L5A6NJ08 208 aaPredicted RBP16.53■□□□□ 0.24
CLN3-259ENST00000637551 GTPBP1O00178 669 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms