RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 HES3Q5TGS1 186 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 STPG1Q5TH74 334 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 FNDC7Q5VTL7 733 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 APOOLQ6UXV4 268 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ZNF550Q7Z398 422 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 PRICKLE2Q7Z3G6 844 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 MEX3DQ86XN8 651 aaKnown RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 APLFQ8IW19 511 aaPredicted RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 GATSQ8NAP1 163 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 ZNF527Q8NB42 609 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 TOR1AIP2Q8NFQ8 470 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 CNIH3Q8TBE1 160 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 OIT3Q8WWZ8 545 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 HDAC2Q92769 488 aaKnown RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 DDA1Q9BW61 102 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 YTHDF1Q9BYJ9 559 aaKnown RBP15.51■□□□□ 0.07
CLN3-252ENST00000636907 TMEM27Q9HBJ8 222 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 AASSQ9UDR5 926 aa15.51■□□□□ 0.07
CLN3-252ENST00000636907 CCDC187A0A096LP49 1063 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 TRBV11-1A0A0K0K1C0 115 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 SCDO00767 359 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 SOX14O95416 240 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 TP53P04637 393 aaPredicted RBP15.5■□□□□ 0.07
CLN3-252ENST00000636907 HPGDP15428 266 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 LCN1P31025 176 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 KRT20P35900 424 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 ADH7P40394 386 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 NUP107P57740 925 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 PTGES3Q15185 160 aaKnown RBP15.5■□□□□ 0.07
CLN3-252ENST00000636907 ZNF613Q6PF04 617 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 CD300LDQ6UXZ3 194 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 WDR88Q6ZMY6 472 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 C16orf47Q6ZP98 133 aaPredicted RBP15.5■□□□□ 0.07
CLN3-252ENST00000636907 MBOAT2Q6ZWT7 520 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 NUBPLQ8TB37 319 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 UBE2FQ969M7 185 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 TP53INP1Q96A56 240 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 DEPDC7Q96QD5 511 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 PHOX2BQ99453 314 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 PRRX2Q99811 253 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 ADNPQ9H2P0 1102 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 SLC35A3Q9Y2D2 325 aa15.5■□□□□ 0.07
CLN3-252ENST00000636907 LOC102723996A0A087X1L8 192 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 A0A0B4J2E0 115 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 A0A1B0GX12 115 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 PLD2O14939 933 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 PIP5K1CO60331 668 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 DLGAP3O95886 979 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 PTNP21246 168 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 POU1F1P28069 291 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 IFNGR2P38484 337 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 OMPP47874 163 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 COX10Q12887 443 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 MAD2L1BPQ15013 274 aaPredicted RBP15.49■□□□□ 0.07
CLN3-252ENST00000636907 PCOLCEQ15113 449 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 TMEM236Q5W0B7 351 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 C6orf15Q6UXA7 325 aaPredicted RBP15.49■□□□□ 0.07
CLN3-252ENST00000636907 RRM2BQ7LG56 351 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 TIPARPQ7Z3E1 657 aaKnown RBP15.49■□□□□ 0.07
CLN3-252ENST00000636907 NRMQ8IXM6 262 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 ENTHD1Q8IYW4 607 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 FAM71CQ8NEG0 241 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 OR2Y1Q8NGV0 311 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 PIGXQ8TBF5 258 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 FAM81AQ8TBF8 368 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 PHOSPHO1Q8TCT1 267 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 GNPDA2Q8TDQ7 276 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 GRHL3Q8TE85 626 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 THAP3Q8WTV1 239 aaPredicted RBP15.49■□□□□ 0.07
CLN3-252ENST00000636907 FAM46AQ96IP4 442 aaKnown RBP15.49■□□□□ 0.07
CLN3-252ENST00000636907 TRIM2Q9C040 744 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 RNF6Q9Y252 685 aa15.49■□□□□ 0.07
CLN3-252ENST00000636907 A0A1B0GWA3 101 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 ZAR1LA6NP61 321 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 C9orf172C9J069 976 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 OIP5O43482 229 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 CLPTM1O96005 669 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 NBL1P41271 181 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 GTF2A1P52655 376 aaPredicted RBP15.48■□□□□ 0.07
CLN3-252ENST00000636907 PNLIPRP2P54317 469 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 PSPHP78330 225 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 RBM48Q5RL73 367 aaKnown RBP15.48■□□□□ 0.07
CLN3-252ENST00000636907 GLRX5Q86SX6 157 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 LSMEM1Q8N8F7 131 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 DEFB124Q8NES8 71 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 RNF217Q8TC41 542 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 SPRY4Q9C004 299 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 RASSF1Q9NS23 344 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 CNIH4Q9P003 139 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 PADI1Q9ULC6 663 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 WDFY3Q8IZQ1 3526 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 TMEM200CA6NKL6 621 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 H3BN98 237 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 ZNF354AO60765 605 aaPredicted RBP15.48■□□□□ 0.07
CLN3-252ENST00000636907 TFAP2AP05549 437 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 UBL4AP11441 157 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 GSTM3P21266 225 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 CRHBPP24387 322 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 FOLR3P41439 243 aa15.48■□□□□ 0.07
CLN3-252ENST00000636907 IDH2P48735 452 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms