RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FRRS1Q6ZNA5 592 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 RPRMLQ8N4K4 120 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 ZPLD1Q8TCW7 415 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 ZBTB8AQ96BR9 441 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 MTHFD2LQ9H903 347 aaPredicted RBP18.75■□□□□ 0.59
CLN3-240ENST00000631023 CALML5Q9NZT1 146 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 CARD8Q9Y2G2 431 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 OR2M5A3KFT3 312 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 PRAMEF27A3QJZ7 478 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 H0Y3Z8 333 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 TNFRSF21O75509 655 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 NUDT14O95848 222 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 EPPINO95925 133 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 SNRPB2P08579 225 aaKnown RBP18.74■□□□□ 0.59
CLN3-240ENST00000631023 ETFAP13804 333 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 STARP49675 285 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 LHX2P50458 406 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 ZNF117Q03924 483 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 CHRNEQ04844 493 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 FADDQ13158 208 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 ACSF3Q4G176 576 aaPredicted RBP18.74■□□□□ 0.59
CLN3-240ENST00000631023 EIF3MQ7L2H7 374 aaKnown RBP18.74■□□□□ 0.59
CLN3-240ENST00000631023 OLIG3Q7RTU3 272 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 ANKFN1Q8N957 763 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 ASB5Q8WWX0 329 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 SDCCAG3Q96C92 435 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 MED17Q9NVC6 651 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 SLAMF8Q9P0V8 285 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 KCNE5Q9UJ90 142 aa18.74■□□□□ 0.59
CLN3-240ENST00000631023 CLDN1O95832 211 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 CSTAP01040 98 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 GP1BBP13224 206 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 ZNF708P17019 499 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 ZNF17P17021 662 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 POU3F2P20265 443 aaPredicted RBP18.73■□□□□ 0.59
CLN3-240ENST00000631023 RNF144AP50876 292 aaPredicted RBP18.73■□□□□ 0.59
CLN3-240ENST00000631023 RGNQ15493 299 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 LACC1Q8IV20 430 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 TOR1AIP2Q8NFQ8 470 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 CA5BP1Q8WTZ4 195 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 CALHM2Q9HA72 323 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.73■□□□□ 0.59
CLN3-240ENST00000631023 ICAM5Q9UMF0 924 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 CORO2BQ9UQ03 480 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 SLC35A3Q9Y2D2 325 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 ZNF337Q9Y3M9 751 aa18.73■□□□□ 0.59
CLN3-240ENST00000631023 C7orf72A4D263 438 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 EVPLLA8MZ36 301 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 CLDN14O95500 239 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 HOXB9P17482 250 aaPredicted RBP18.72■□□□□ 0.59
CLN3-240ENST00000631023 CHRNB4P30926 498 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 EIF1P41567 113 aaKnown RBP18.72■□□□□ 0.59
CLN3-240ENST00000631023 CLDN18P56856 261 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 EEFSECP57772 596 aaKnown RBP18.72■□□□□ 0.59
CLN3-240ENST00000631023 FGFBP1Q14512 234 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 NSUN5P2Q63ZY6 315 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 CBLN3Q6UW01 205 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 CHMP1BQ7LBR1 199 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 MEIOBQ8N635 442 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 TMCO5AQ8N6Q1 288 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 OR5M1Q8NGP8 315 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 LAT2Q9GZY6 243 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 SLC38A1Q9H2H9 487 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 SLC25A37Q9NYZ2 338 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 VAPAQ9P0L0 249 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.72■□□□□ 0.59
CLN3-240ENST00000631023 RNF6Q9Y252 685 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 KLF2Q9Y5W3 355 aaPredicted RBP18.72■□□□□ 0.59
CLN3-240ENST00000631023 GMEB1Q9Y692 573 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 AP4B1Q9Y6B7 739 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 KIAA1549Q9HCM3 1950 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 CD8B2A6NJW9 211 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 H3BML4 177 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 CHRM4P08173 479 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 CD1EP15812 388 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 ADSLP30566 484 aaPredicted RBP18.72■□□□□ 0.59
CLN3-240ENST00000631023 CRISP3P54108 245 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 MAPK14Q16539 360 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 TMEM44Q2T9K0 475 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 PLPPR5Q32ZL2 321 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 RIPPLY2Q5TAB7 128 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 GTPBP8Q8N3Z3 284 aaPredicted RBP18.72■□□□□ 0.59
CLN3-240ENST00000631023 DPP10Q8N608 796 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 OR5W2Q8NH69 310 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 SLC38A5Q8WUX1 472 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 ZG16BQ96DA0 208 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 TRIB1Q96RU8 372 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 SAR1AQ9NR31 198 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 L3MBTL1Q9Y468 752 aa18.72■□□□□ 0.59
CLN3-240ENST00000631023 CYP7B1O75881 506 aa18.71■□□□□ 0.59
CLN3-240ENST00000631023 TFPTP0C1Z6 253 aa18.71■□□□□ 0.59
CLN3-240ENST00000631023 CCR4P51679 360 aa18.71■□□□□ 0.59
CLN3-240ENST00000631023 KCNJ10P78508 379 aa18.71■□□□□ 0.59
CLN3-240ENST00000631023 CBFBQ13951 182 aa18.71■□□□□ 0.59
CLN3-240ENST00000631023 PEX5LQ8IYB4 626 aa18.71■□□□□ 0.59
CLN3-240ENST00000631023 ARSGQ96EG1 525 aa18.71■□□□□ 0.59
CLN3-240ENST00000631023 TUBA1CQ9BQE3 449 aa18.71■□□□□ 0.59
CLN3-240ENST00000631023 CACYBPQ9HB71 228 aaKnown RBP18.71■□□□□ 0.59
CLN3-240ENST00000631023 GPC6Q9Y625 555 aaPredicted RBP18.71■□□□□ 0.59
CLN3-240ENST00000631023 HCFC1P51610 2035 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms