RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SARAFQ96BY9 339 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 LRRC58Q96CX6 371 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 CMTM5Q96DZ9 223 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 TMEM19Q96HH6 336 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 LRRC37BQ96QE4 947 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 SH3GL1Q99961 368 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 SLC39A3Q9BRY0 314 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 OR2B2Q9GZK3 357 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 SAP130Q9H0E3 1048 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 QRSL1Q9H0R6 528 aaKnown RBP16.43■□□□□ 0.22
CLN3-239ENST00000628023 SLC38A1Q9H2H9 487 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 ACAD8Q9UKU7 415 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 RPH3AQ9Y2J0 694 aaPredicted RBP16.43■□□□□ 0.22
CLN3-239ENST00000628023 SLC6A5Q9Y345 797 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 GMEB1Q9Y692 573 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 NCKAP5O14513 1909 aa16.43■□□□□ 0.22
CLN3-239ENST00000628023 DNAJC13O75165 2243 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 IGLV3-32A0A0A0MS00 114 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 A0A1B0GVC2 190 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 OR14I1A6ND48 311 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 CCL21O00585 134 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 AIM2O14862 343 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 CYP7B1O75881 506 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 CSTAP01040 98 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 NPPAP01160 153 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 TFPTP0C1Z6 253 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 BMP2P12643 396 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 GPX2P18283 190 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 HK1P19367 917 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 ZNF41P51814 821 aaPredicted RBP16.42■□□□□ 0.22
CLN3-239ENST00000628023 ZNF117Q03924 483 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 ART3Q13508 389 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 SELPLGQ14242 412 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 RPS26P11Q5JNZ5 115 aaPredicted RBP16.42■□□□□ 0.22
CLN3-239ENST00000628023 RAET1LQ5VY80 246 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 EIF3MQ7L2H7 374 aaKnown RBP16.42■□□□□ 0.22
CLN3-239ENST00000628023 CD163Q86VB7 1156 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 PEX5LQ8IYB4 626 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 CCDC197Q8NCU1 140 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 NFKBIDQ8NI38 313 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 WDR60Q8WVS4 1066 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 C1GALT1C1Q96EU7 318 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 SFXN2Q96NB2 322 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 TREX2Q9BQ50 279 aaPredicted RBP16.42■□□□□ 0.22
CLN3-239ENST00000628023 MTHFD2LQ9H903 347 aaPredicted RBP16.42■□□□□ 0.22
CLN3-239ENST00000628023 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.42■□□□□ 0.22
CLN3-239ENST00000628023 SPRR3Q9UBC9 169 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 TNFRSF10DQ9UBN6 386 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 KCNE5Q9UJ90 142 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 CARD8Q9Y2G2 431 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 L3MBTL1Q9Y468 752 aa16.42■□□□□ 0.22
CLN3-239ENST00000628023 B4DXG7 233 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 BCKDKO14874 412 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 ZNF264O43296 627 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 ARAFP10398 606 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 SLC6A2P23975 617 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 SCARB2Q14108 478 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 MAPK14Q16539 360 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 NDUFAF6Q330K2 333 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 WLSQ5T9L3 541 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 AAGABQ6PD74 315 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 FGD2Q7Z6J4 655 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 C10orf111Q8N326 155 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 OR8J3Q8NGG0 315 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 BBS10Q8TAM1 723 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 FAM57AQ8TBR7 257 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 VDAC3Q9Y277 283 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 SLC35A3Q9Y2D2 325 aa16.41■□□□□ 0.22
CLN3-239ENST00000628023 KLF2Q9Y5W3 355 aaPredicted RBP16.41■□□□□ 0.22
CLN3-239ENST00000628023 A0A0G2JPF8 293 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 AGAP5A6NIR3 686 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 HNRNPCL2B2RXH8 293 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 HNRNPCL3B7ZW38 293 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 FXYD1O00168 92 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 NDUFAB1O14561 156 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 HNRNPCL1O60812 293 aaKnown RBP16.4■□□□□ 0.22
CLN3-239ENST00000628023 DBIP07108 87 aaKnown RBP16.4■□□□□ 0.22
CLN3-239ENST00000628023 UBTFL6P0CB48 400 aaPredicted RBP16.4■□□□□ 0.22
CLN3-239ENST00000628023 HNRNPCL4P0DMR1 293 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 IL7RP16871 459 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 PRDX6P30041 224 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 CA7P43166 264 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 NUDT2P50583 147 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 P2RX1P51575 399 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 CDK6Q00534 326 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 FGFBP1Q14512 234 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 MAPK11Q15759 364 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 C3AR1Q16581 482 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 LIN52Q52LA3 116 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 NANOGP8Q6NSW7 305 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 RPTNQ6XPR3 784 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 CHERPQ8IWX8 916 aaKnown RBP16.4■□□□□ 0.22
CLN3-239ENST00000628023 ANKS4BQ8N8V4 417 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 OR5M9Q8NGP3 310 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 PMM1Q92871 262 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 ABTB1Q969K4 478 aaPredicted RBP16.4■□□□□ 0.22
CLN3-239ENST00000628023 ZG16BQ96DA0 208 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 ECSITQ9BQ95 431 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 TMEM38AQ9H6F2 299 aa16.4■□□□□ 0.22
CLN3-239ENST00000628023 NANOGQ9H9S0 305 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms