RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 AIFM1O95831 613 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 CHRNB4P30926 498 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 GABRA2P47869 451 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 TPMTP51580 245 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 HOXC5Q00444 222 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 TNFRSF17Q02223 184 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 GPR18Q14330 331 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 MEX3DQ86XN8 651 aaKnown RBP10.68□□□□□ -0.7
CLIP1-219ENST00000620786 MRPL41Q8IXM3 137 aaKnown RBP10.68□□□□□ -0.7
CLIP1-219ENST00000620786 LRRC18Q8N456 261 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 PAPD5Q8NDF8 572 aaKnown RBP10.68□□□□□ -0.7
CLIP1-219ENST00000620786 CSNK2A3Q8NEV1 391 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 CD93Q9NPY3 652 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 KLHL42Q9P2K6 505 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 G3V3Y1 287 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 ITGBL1O95965 494 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-219ENST00000620786 RPS17P08708 135 aaKnown RBP10.68□□□□□ -0.7
CLIP1-219ENST00000620786 RAB3BP20337 219 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 MBTPS1Q14703 1052 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 TMEM205Q6UW68 189 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 VRK2Q86Y07 508 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 METTL25Q8N6Q8 603 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 CREB3L1Q96BA8 519 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 POTEKPQ9BYX7 375 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 ULBP2Q9BZM5 246 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 ZNF337Q9Y3M9 751 aa10.68□□□□□ -0.7
CLIP1-219ENST00000620786 ABLIM3O94929 683 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CHRM4P08173 479 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 MAGEA3P43357 314 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 FXYD4P59646 89 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 PAQR9Q6ZVX9 377 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CPT1CQ8TCG5 803 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 MGLLQ99685 303 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 SEMA6CQ9H3T2 930 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 B3GNT2Q9NY97 397 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 DHCR7Q9UBM7 475 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 DDX60Q8IY21 1712 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 A0A0A6YYH2 397 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 A6NJ64 397 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 SNNO75324 88 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 GNAO1P09471 354 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 HOXA9P31269 272 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 SIRPAP78324 504 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 SQSTM1Q13501 440 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 RNF175Q8N4F7 328 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 ARFGAP1Q8N6T3 406 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CD300LFQ8TDQ1 290 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CHPT1Q8WUD6 406 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 FOXN4Q96NZ1 517 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 INTS14Q96SY0 518 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 SPHK1Q9NYA1 384 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 PIGBOS1A0A0B4J2F0 54 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 SHISA7A6NL88 538 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 KIAA0513O60268 411 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CSF2P04141 144 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 ZNF182P17025 639 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 EPHA1P21709 976 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 PRDX3P30048 256 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CEACAM7Q14002 265 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 KIAA1211LQ6NV74 962 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 MOB3CQ70IA8 216 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CPOQ8IVL8 374 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 MS4A15Q8N5U1 240 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CDC6Q99741 560 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 TM7SF3Q9NS93 570 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 NOSIPQ9Y314 301 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 MRPS2Q9Y399 296 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 PCDHGA8Q9Y5G5 932 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 TIMM8BQ9Y5J9 83 aaPredicted RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 TRAV27A0A087WT01 109 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 SERPINA5P05154 406 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 ATXN1LP0C7T5 689 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 POLR2HP52434 150 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 EIF2S3LQ2VIR3 472 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 TMEM52BQ4KMG9 183 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CPZQ66K79 652 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 TMEM151AQ8N4L1 468 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 OR13J1Q8NGT2 312 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 ASB12Q8WXK4 309 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 UCN3Q969E3 161 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 WDR83Q9BRX9 315 aaKnown RBP10.67□□□□□ -0.7
CLIP1-219ENST00000620786 PADI1Q9ULC6 663 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CARD8Q9Y2G2 431 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 MYH11P35749 1972 aa10.67□□□□□ -0.7
CLIP1-219ENST00000620786 CLCA1A8K7I4 914 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 SUSD5O60279 629 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 MITFO75030 526 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-219ENST00000620786 POU3F1Q03052 451 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-219ENST00000620786 TMEM176BQ3YBM2 270 aaPredicted RBP10.66□□□□□ -0.7
CLIP1-219ENST00000620786 BPIFA2Q96DR5 249 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 C16orf58Q96GQ5 468 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 TXNDC15Q96J42 360 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 ALG8Q9BVK2 526 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 ATP13A2Q9NQ11 1180 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 PLEKHJ1Q9NW61 149 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 PPP1R14DQ9NXH3 145 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 SLC1A7O00341 560 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 DDAH2O95865 285 aa10.66□□□□□ -0.7
CLIP1-219ENST00000620786 FGF4P08620 206 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms