RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 RBBP4Q09028 425 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 STX4Q12846 297 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 SUZ12Q15022 739 aaKnown RBP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 FCN2Q15485 313 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 VN1R4Q7Z5H5 301 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 ASPGQ86U10 573 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 SMAP2Q8WU79 429 aaPredicted RBP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 AKAP1Q92667 903 aaKnown RBP eCLIP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 GPA33Q99795 319 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 UBE2ZQ9H832 354 aaPredicted RBP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 TXNL4BQ9NX01 149 aaKnown RBP13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 SEC14L4Q9UDX3 406 aa13.5□□□□□ -0.25
SHROOM1-208ENST00000617339 TEX46H3BTG2 121 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 GTPBP1O00178 669 aaKnown RBP13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 CLEC3AO75596 197 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 SCG5P05408 212 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 NR2F6P10588 404 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 PDX1P52945 283 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 MAZP56270 477 aaKnown RBP13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 AGERQ15109 404 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 KIAA1161Q6NSJ0 714 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC30A6Q6NXT4 461 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 OR7D2Q96RA2 312 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 RACGAP1Q9H0H5 632 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 NIPAL2Q9H841 368 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 BEX1Q9HBH7 125 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 WASH6PQ9NQA3 447 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC9A8Q9Y2E8 581 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 CASKO14936 926 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 SEMG1P04279 462 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 HPGDP15428 266 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 HLA-DMAP28067 261 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 LIMK1P53667 647 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 HHEXQ03014 270 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 ZNF33BQ06732 778 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 BTN1A1Q13410 526 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 TNK1Q13470 666 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 BCL2L15Q5TBC7 163 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 CHMP1BQ7LBR1 199 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 CAMKMTQ7Z624 323 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 OR7G2Q8NG99 324 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 ZFPM2Q8WW38 1151 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC6A18Q96N87 628 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 NELL2Q99435 816 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 B3GAT2Q9NPZ5 323 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 NUP50Q9UKX7 468 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 OR10H1Q9Y4A9 318 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 COL4A3Q01955 1670 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 MED12Q93074 2177 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 TOXO94900 526 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 RECKO95980 971 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 UGT2B7P16662 529 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 GABRG2P18507 467 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 ELAVL4P26378 380 aaKnown RBP13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 LSSP48449 732 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 PCBP4P57723 403 aaKnown RBP13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 RUNX2Q13950 521 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 OR2G6Q5TZ20 316 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 HSDL2Q6YN16 418 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 LHFPL3Q86UP9 236 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 OR9A4Q8NGU2 314 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 OR52P1PQ8NH57 321 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 TTC9Q92623 222 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 GTPBP2Q9BX10 602 aaKnown RBP13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 TMEM38AQ9H6F2 299 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 DDX31Q9H8H2 851 aaKnown RBP13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 B3GNT2Q9NY97 397 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 SCML1Q9UN30 329 aa13.49□□□□□ -0.25
SHROOM1-208ENST00000617339 H0YGG7 62 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 ORC5O43913 435 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 RDH16O75452 317 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 LTBRP36941 435 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 HSD17B2P37059 387 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 CTBP2P56545 445 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 FOXL2P58012 376 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 ARF3P61204 181 aaPredicted RBP13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 STXBP1P61764 594 aaKnown RBP13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 EEF1A2Q05639 463 aaKnown RBP13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 ZBTB37Q5TC79 503 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 TMEM65Q6PI78 240 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 GDPD1Q8N9F7 314 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 GATSQ8NAP1 163 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 AVL9Q8NBF6 648 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 ZNF680Q8NEM1 530 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 CEP76Q8TAP6 659 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 SUN3Q8TAQ9 357 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 SLC37A2Q8TED4 501 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 TBC1D20Q96BZ9 403 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 DCLRE1CQ96SD1 692 aaKnown RBP13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 CDCA4Q9BXL8 241 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 DIABLOQ9NR28 239 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 ACTR10Q9NZ32 417 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 PLEKHB1Q9UF11 243 aaPredicted RBP13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 GMEB2Q9UKD1 530 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 ASB4Q9Y574 426 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 A0A0A6YYD5 115 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 NUDT14O95848 222 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 FCER2P06734 321 aa13.48□□□□□ -0.25
SHROOM1-208ENST00000617339 PRR5P85299 388 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms