RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 MED28Q9H204 178 aa13.08□□□□□ -0.32
COL6A1-207ENST00000612273 BCL2L10Q9HD36 194 aa13.08□□□□□ -0.32
COL6A1-207ENST00000612273 ACOXLQ9NUZ1 547 aa13.08□□□□□ -0.32
COL6A1-207ENST00000612273 BABAM2Q9NXR7 383 aa13.08□□□□□ -0.32
COL6A1-207ENST00000612273 KIAA1671Q9BY89 1806 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ANKRD61A6NGH8 418 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 PPP1R3DO95685 299 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 NT5EP21589 574 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 DDX6P26196 483 aaKnown RBP eCLIP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ERP29P30040 261 aaKnown RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 PEBP1P30086 187 aaKnown RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 RPA4Q13156 261 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 NTRK2Q16620 822 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 PRPF38BQ5VTL8 546 aaKnown RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ANKRD54Q6NXT1 300 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 FRRS1Q6ZNA5 592 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 SFTPA2Q8IWL1 248 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 OTUB2Q96DC9 234 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 FN3KQ9H479 309 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 PRKAG2Q9UGJ0 569 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ZNF443Q9Y2A4 671 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 PLXNA2O75051 1894 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 SLC9B1P1A6NJY1 282 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 GRXCR1A8MXD5 290 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CASC3O15234 703 aaKnown RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 PROM1O43490 865 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CHST10O43529 356 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 GMFGO60234 142 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CDC123O75794 336 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 PTHLHP12272 177 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 GIFP27352 417 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 VEGFBP49765 207 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 MAB21L1Q13394 359 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CRMP1Q14194 572 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CST6Q15828 149 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 MRPL2Q5T653 305 aaKnown RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CD300LDQ6UXZ3 194 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 RFPL4BQ6ZWI9 263 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ELMOD2Q8IZ81 293 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 OR8H3Q8N146 312 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 POGLUT1Q8NBL1 392 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 TRMT10AQ8TBZ6 339 aaKnown RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 FGF13Q92913 245 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 TSACCQ96A04 125 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 RFT1Q96AA3 541 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CD180Q99467 661 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ACTRT3Q9BYD9 372 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 GSDMCQ9BYG8 508 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 SIDT1Q9NXL6 827 aaKnown RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 IL20Q9NYY1 176 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 NLGN3Q9NZ94 848 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 A0A1W2PQU0 124 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ZSCAN5BA6NJL1 495 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 IMPA2O14732 288 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 HCN1O60741 890 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CXCL3P19876 107 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 POU3F3P20264 500 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 FGF9P31371 208 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 LYPD4Q6UWN0 246 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 REM2Q8IYK8 340 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ZNF433Q8N7K0 673 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 ZNF707Q96C28 371 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 CHIAQ9BZP6 476 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 SLA2Q9H6Q3 261 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 FGF22Q9HCT0 170 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 PHPT1Q9NRX4 125 aaPredicted RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 NCKAP1Q9Y2A7 1128 aa13.07□□□□□ -0.32
COL6A1-207ENST00000612273 AK6Q9Y3D8 172 aaKnown RBP13.07□□□□□ -0.32
COL6A1-207ENST00000612273 MTCL1Q9Y4B5 1905 aaKnown RBP13.06□□□□□ -0.32
COL6A1-207ENST00000612273 EFCAB14O75071 495 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 KAT7O95251 611 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 NFATC1O95644 943 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 MT-ND4P03905 459 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 POLR2CP19387 275 aaPredicted RBP13.06□□□□□ -0.32
COL6A1-207ENST00000612273 HTR1FP30939 366 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 PSMB10P40306 273 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 CLDN12P56749 244 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 FZD5Q13467 585 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 HYAL4Q2M3T9 481 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 OTPQ5XKR4 325 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 SFRP4Q6FHJ7 346 aaPredicted RBP13.06□□□□□ -0.32
COL6A1-207ENST00000612273 TANGO2Q6ICL3 276 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 ZNF765Q7L2R6 523 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 SSX6Q7RTT6 188 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 NATD1Q8N6N6 113 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 ZNF485Q8NCK3 441 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 OR5J2Q8NH18 312 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 OR4K13Q8NH42 304 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 ZFAND1Q8TCF1 268 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 DNAJA4Q8WW22 397 aaPredicted RBP13.06□□□□□ -0.32
COL6A1-207ENST00000612273 PATE1Q8WXA2 126 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 AKAP1Q92667 903 aaKnown RBP eCLIP13.06□□□□□ -0.32
COL6A1-207ENST00000612273 MGAT4AQ9UM21 535 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 CDH10Q9Y6N8 788 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 POM121BA6NF01 834 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 PRR23D1E9PI22 279 aaPredicted RBP13.06□□□□□ -0.32
COL6A1-207ENST00000612273 RGS9O75916 674 aaPredicted RBP13.06□□□□□ -0.32
COL6A1-207ENST00000612273 TIMP1P01033 207 aa13.06□□□□□ -0.32
COL6A1-207ENST00000612273 PRR23D2P0DMB1 279 aaPredicted RBP13.06□□□□□ -0.32
COL6A1-207ENST00000612273 FPR3P25089 353 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms