RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ARSKQ6UWY0 536 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 EIF3MQ7L2H7 374 aaKnown RBP15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 CD163Q86VB7 1156 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 DOLPP1Q86YN1 238 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 SH3BGRL2Q9UJC5 107 aa15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 RPH3AQ9Y2J0 694 aaPredicted RBP15.01□□□□□ -0.01
CCDC28A-202ENST00000611852 A0A0G2JPF8 293 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 HNRNPCL2B2RXH8 293 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 HNRNPCL3B7ZW38 293 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 BCKDKO14874 412 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 EIF4E2O60573 245 aaKnown RBP15□□□□□ -0.01
CCDC28A-202ENST00000611852 HNRNPCL1O60812 293 aaKnown RBP15□□□□□ -0.01
CCDC28A-202ENST00000611852 SEMA7AO75326 666 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 CSTAP01040 98 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 HNRNPCL4P0DMR1 293 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 BMP7P18075 431 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 HK1P19367 917 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 TCEA1P23193 301 aaKnown RBP15□□□□□ -0.01
CCDC28A-202ENST00000611852 P2RX1P51575 399 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 CASP6P55212 293 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 B3GALT5-AS1P59052 145 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 KCNJ10P78508 379 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 CDK6Q00534 326 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 SRSF1Q07955 248 aaKnown RBP eCLIP15□□□□□ -0.01
CCDC28A-202ENST00000611852 SKP2Q13309 424 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 GXYLT1Q4G148 440 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 C4orf17Q53FE4 359 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 RABL3Q5HYI8 236 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 PRAMEF8Q5VWM4 474 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 PRAMEF7Q5VXH5 474 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 PEX5LQ8IYB4 626 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 METTL25Q8N6Q8 603 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 FAM71CQ8NEG0 241 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 OR8J3Q8NGG0 315 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 NFKBIDQ8NI38 313 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 RELTQ969Z4 430 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 LRRC37BQ96QE4 947 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 TIMP4Q99727 224 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 UGT2B28Q9BY64 529 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 BCL2L10Q9HD36 194 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15□□□□□ -0.01
CCDC28A-202ENST00000611852 PNPLA3Q9NST1 481 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 GID8Q9NWU2 228 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 ACAD8Q9UKU7 415 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 VDAC3Q9Y277 283 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 SLC35A3Q9Y2D2 325 aa15□□□□□ -0.01
CCDC28A-202ENST00000611852 CLEC18AA5D8T8 446 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 CLDN24A6NM45 220 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 C5orf58C9J3I9 102 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 LRRTM2O43300 516 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 BCAS1O75363 584 aaPredicted RBP14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 DCTN3O75935 186 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 ACTL6AO96019 429 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 DBIP07108 87 aaKnown RBP14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 UBTFL6P0CB48 400 aaPredicted RBP14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 PGM1P36871 562 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 SUMO3P55854 103 aaPredicted RBP14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 PLAURQ03405 335 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 ZSCAN26Q16670 478 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 GLYR1Q49A26 553 aaPredicted RBP14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 DCST1Q5T197 706 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 REEP3Q6NUK4 255 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 CLEC18BQ6UXF7 455 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 PTOV1Q86YD1 416 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 CLEC18CQ8NCF0 446 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 OR5M9Q8NGP3 310 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 ABTB1Q969K4 478 aaPredicted RBP14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 CMTM5Q96DZ9 223 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 SFXN2Q96NB2 322 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 SH3GL1Q99961 368 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 LAT2Q9GZY6 243 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 MED17Q9NVC6 651 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 ERRFI1Q9UJM3 462 aaPredicted RBP14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 SLC5A6Q9Y289 635 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 HEATR5AQ86XA9 2040 aa14.99□□□□□ -0.01
CCDC28A-202ENST00000611852 A0A087WZY1 265 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 A0A1B0GUH1 482 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 ERICH4A6NGS2 130 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 AIM2O14862 343 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 PGM3O95394 542 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 NID1P14543 1247 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 IL7RP16871 459 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 SLC6A2P23975 617 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 CHMP24386 653 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 PRDX6P30041 224 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 GCKP35557 465 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 GZMMP51124 257 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 ZNF41P51814 821 aaPredicted RBP14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 SCARB2Q14108 478 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 CYP51A1Q16850 503 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 TMEM44Q2T9K0 475 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 WLSQ5T9L3 541 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 RAET1LQ5VY80 246 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 AAGABQ6PD74 315 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 C3P1Q6ZMU1 363 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 NET1Q7Z628 596 aaPredicted RBP14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 SERPINA11Q86U17 422 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 FJX1Q86VR8 437 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 CMIPQ8IY22 773 aa14.98□□□□□ -0.01
CCDC28A-202ENST00000611852 TOR1AIP2Q8NFQ8 470 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms