RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 PLPP5Q8NEB5 264 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 RPL3LQ92901 407 aaKnown RBP10.84□□□□□ -0.67
VRK3-223ENST00000601341 GIMAP5Q96F15 307 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 TREX2Q9BQ50 279 aaPredicted RBP10.84□□□□□ -0.67
VRK3-223ENST00000601341 NEURL2Q9BR09 285 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 DDA1Q9BW61 102 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 VN1R1Q9GZP7 353 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 SLC26A1Q9H2B4 701 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 OR51I1Q9H343 314 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 EQTNQ9NQ60 294 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 SEC14L3Q9UDX4 400 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 SLC9A8Q9Y2E8 581 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 IFT52Q9Y366 437 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 RPL36Q9Y3U8 105 aaKnown RBP10.84□□□□□ -0.67
VRK3-223ENST00000601341 PEX16Q9Y5Y5 336 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 B3GALT1Q9Y5Z6 326 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 PCNX2A6NKB5 2137 aa10.84□□□□□ -0.67
VRK3-223ENST00000601341 TCRBV16S1A1N1A0A5B0 115 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 CCRL2O00421 344 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 COQ9O75208 318 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 UPK1BO75841 260 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 AGR2O95994 175 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 CT62P0C5K7 136 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 OR12D1P0DN82 309 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 GADD45AP24522 165 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 S100A5P33763 92 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 LSM3P62310 102 aaKnown RBP10.83□□□□□ -0.68
VRK3-223ENST00000601341 MAPK11Q15759 364 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 TMEM164Q5U3C3 297 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 MFSD12Q6NUT3 480 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 ZCCHC12Q6PEW1 402 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 DGAT2L6Q6ZPD8 337 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 LAPTM4BQ86VI4 370 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 EGFL6Q8IUX8 553 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 WDR36Q8NI36 951 aaKnown RBP10.83□□□□□ -0.68
VRK3-223ENST00000601341 RNF217Q8TC41 542 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 ADAMTS15Q8TE58 950 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 XAGE5Q8WWM1 108 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 RAB8BQ92930 207 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 PMEPA1Q969W9 287 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 GTPBP3Q969Y2 492 aaKnown RBP10.83□□□□□ -0.68
VRK3-223ENST00000601341 C16orf58Q96GQ5 468 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 TRNT1Q96Q11 434 aaKnown RBP10.83□□□□□ -0.68
VRK3-223ENST00000601341 TAPBPLQ9BX59 468 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 SERHL2Q9H4I8 314 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 ADAP2Q9NPF8 381 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 PISDQ9UG56 409 aa10.83□□□□□ -0.68
VRK3-223ENST00000601341 NXT1Q9UKK6 140 aaKnown RBP10.83□□□□□ -0.68
VRK3-223ENST00000601341 A0A075B6Q4 140 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 A0A0G2JPF8 293 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 TRBV4-1A0A0J9YWV2 114 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 SPAARA0A1B0GVQ0 90 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 IRGMA1A4Y4 181 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 VSTM2BA6NLU5 285 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 HNRNPCL2B2RXH8 293 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 HNRNPCL3B7ZW38 293 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 SYT5O00445 386 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 SOX30O94993 753 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 PTHP01270 115 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 SCG5P05408 212 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 HNRNPCL4P0DMR1 293 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 GSTM3P21266 225 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 S1PR1P21453 382 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 ETV5P41161 510 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 RPS3AP61247 264 aaKnown RBP10.82□□□□□ -0.68
VRK3-223ENST00000601341 COPZ1P61923 177 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 ZNF267Q14586 743 aaPredicted RBP10.82□□□□□ -0.68
VRK3-223ENST00000601341 GANABQ14697 944 aaKnown RBP10.82□□□□□ -0.68
VRK3-223ENST00000601341 ELAVL1Q15717 326 aaKnown RBP10.82□□□□□ -0.68
VRK3-223ENST00000601341 CDC73Q6P1J9 531 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 CASP12Q6UXS9 341 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 BTLAQ7Z6A9 289 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 TMEM151BQ8IW70 566 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 CACTIN-AS1Q8N1I8 211 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 FAM26EQ8N5C1 309 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 CDRT4Q8N9R6 151 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 SIMC1Q8NDZ2 872 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 OR5D16Q8NGK9 328 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 DOK4Q8TEW6 326 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 SNRNP27Q8WVK2 155 aaKnown RBP10.82□□□□□ -0.68
VRK3-223ENST00000601341 MR1Q95460 341 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 TSLPQ969D9 159 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 PHOX2BQ99453 314 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 MGLLQ99685 303 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 YIPF4Q9BSR8 244 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 ANKRD19PQ9H560 264 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 ZBTB20Q9HC78 741 aaPredicted RBP10.82□□□□□ -0.68
VRK3-223ENST00000601341 PNO1Q9NRX1 252 aaKnown RBP10.82□□□□□ -0.68
VRK3-223ENST00000601341 CALML5Q9NZT1 146 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 SELENONQ9NZV5 590 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 SEC14L4Q9UDX3 406 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 GPN3Q9UHW5 284 aaPredicted RBP10.82□□□□□ -0.68
VRK3-223ENST00000601341 CLCA3PQ9Y6N3 262 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 ZNF292O60281 2723 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 C17orf105B2RV13 164 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 IDSB3KWA1 339 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 C9J4A7 227 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 TM4SF5O14894 197 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 UGT2B17O75795 530 aa10.82□□□□□ -0.68
VRK3-223ENST00000601341 STK17BO94768 372 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms