RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZNF649Q9BS31 505 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 TEX12Q9BXU0 123 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 TCRBV16S1A1N1A0A5B0 115 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 PRR23D1E9PI22 279 aaPredicted RBP17.09■□□□□ 0.33
UPF1-210ENST00000600689 RHOP08100 348 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 ADRB1P08588 477 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 ACSM4P0C7M7 580 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 PRR23D2P0DMB1 279 aaPredicted RBP17.09■□□□□ 0.33
UPF1-210ENST00000600689 IFNGR2P38484 337 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 MAGEB1P43366 347 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 AGERQ15109 404 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 GPR68Q15743 365 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 ARSKQ6UWY0 536 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 PRSS42Q7Z5A4 293 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 NUDT13Q86X67 352 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 YIPF5Q969M3 257 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 MS4A8Q9BY19 250 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 CAPN10Q9HC96 672 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 SPHK2Q9NRA0 654 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 NUBP2Q9Y5Y2 271 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 C7orf66A4D0T2 115 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 MID1O15344 667 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 NDUFS4O43181 175 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 THBS2P35442 1172 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 OMPP47874 163 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 ARHGDIBP52566 201 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 CLDN12P56749 244 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 LTB4RQ15722 352 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 TUSC1Q2TAM9 212 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 DGLUCYQ7Z3D6 616 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 ZNF547Q8IVP9 402 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 UBE2E3Q969T4 207 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 C6orf106Q9H6K1 298 aaPredicted RBP17.09■□□□□ 0.33
UPF1-210ENST00000600689 KCMF1Q9P0J7 381 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 SLC7A7Q9UM01 511 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 RCE1Q9Y256 329 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 SPTBP11277 2137 aa17.09■□□□□ 0.33
UPF1-210ENST00000600689 TRIM77I1YAP6 450 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 GKN3PP0CG01 181 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 ICAM2P13598 275 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 MC3RP41968 323 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 SLC25A30Q5SVS4 291 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 CD276Q5ZPR3 534 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 C18orf63Q68DL7 685 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 RASSF6Q6ZTQ3 369 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 ARL14Q8N4G2 192 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 TFGQ92734 400 aaPredicted RBP17.08■□□□□ 0.33
UPF1-210ENST00000600689 SFXN2Q96NB2 322 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 OR2M2Q96R28 347 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 AIF1LQ9BQI0 150 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 ZDHHC5Q9C0B5 715 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 PHF11Q9UIL8 331 aa17.08■□□□□ 0.33
UPF1-210ENST00000600689 PSMD9O00233 223 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 ATXN8OSP0DMR3 200 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 ACSM3Q53FZ2 586 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 TCTE1Q5JU00 501 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 CCNJQ5T5M9 372 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 LRRC56Q8IYG6 542 aaPredicted RBP17.08■□□□□ 0.32
UPF1-210ENST00000600689 OR2T33Q8NG76 320 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 ABHD4Q8TB40 342 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 GSX2Q9BZM3 304 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 SLC35C2Q9NQQ7 365 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 MRPS18AQ9NVS2 196 aaKnown RBP17.08■□□□□ 0.32
UPF1-210ENST00000600689 RABL2BQ9UNT1 228 aa17.08■□□□□ 0.32
UPF1-210ENST00000600689 NPR2P20594 1047 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 NOS3P29474 1203 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 RBMS1P29558 406 aaKnown RBP17.07■□□□□ 0.32
UPF1-210ENST00000600689 HTR1FP30939 366 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 MTNR1BP49286 362 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 KHKP50053 298 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 TGM3Q08188 693 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ST3GAL3Q11203 375 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 TMEM255AQ5JRV8 349 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 PYHIN1Q6K0P9 492 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 CD300LDQ6UXZ3 194 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 PARS2Q7L3T8 475 aaKnown RBP17.07■□□□□ 0.32
UPF1-210ENST00000600689 GET4Q7L5D6 327 aaPredicted RBP17.07■□□□□ 0.32
UPF1-210ENST00000600689 FAM129CQ86XR2 697 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 RFLNBQ8N5W9 214 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ZNF433Q8N7K0 673 aaPredicted RBP17.07■□□□□ 0.32
UPF1-210ENST00000600689 OR2T4Q8NH00 348 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 OR51A7Q8NH64 312 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ACOT12Q8WYK0 555 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 FBXW5Q969U6 566 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 UBQLN3Q9H347 655 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ISYNA1Q9NPH2 558 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 SCN3AQ9NY46 2000 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 SPTBN5Q9NRC6 3674 aaKnown RBP17.07■□□□□ 0.32
UPF1-210ENST00000600689 NPIPA5A0A0B4J1W7 369 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 TRABD2BA6NFA1 517 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 NPIPA7E9PJI5 369 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 NPIPA8P0DM63 369 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 RRASP10301 218 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 PRG2P13727 222 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 EPCAMP16422 314 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 PRKACAP17612 351 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 ATF1P18846 271 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 NTSP30990 170 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 TP53I3Q53FA7 332 aa17.07■□□□□ 0.32
UPF1-210ENST00000600689 CLLU1Q5K131 121 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms