RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ACTR6Q9GZN1 396 aa15.72■□□□□ 0.11
SHKBP1-223ENST00000600552 FANCFQ9NPI8 374 aa15.72■□□□□ 0.11
SHKBP1-223ENST00000600552 PAQR5Q9NXK6 330 aaPredicted RBP15.72■□□□□ 0.11
SHKBP1-223ENST00000600552 SLC17A7Q9P2U7 560 aa15.72■□□□□ 0.11
SHKBP1-223ENST00000600552 TMED5Q9Y3A6 229 aa15.72■□□□□ 0.11
SHKBP1-223ENST00000600552 TMEM114B3SHH9 223 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 NPIPB8E9PQR5 432 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 CFLARO15519 480 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 KLF4O43474 513 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 TBX19O60806 448 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 TUBBP07437 444 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 NGFRP08138 427 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 LOXP28300 417 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 CCT3P49368 545 aaKnown RBP15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 OCRLQ01968 901 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 ZNF117Q03924 483 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 NDUFAF6Q330K2 333 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 TMEM176BQ3YBM2 270 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 GTF2IRD2BQ6EKJ0 949 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 ZNF704Q6ZNC4 412 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 BEND4Q6ZU67 534 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 GTF2IRD2Q86UP8 949 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 ZNF619Q8N2I2 560 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 FBXO27Q8NI29 283 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 ACTRT2Q8TDY3 377 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 ADAMTS15Q8TE58 950 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 TMEM171Q8WVE6 324 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 KLHL15Q96M94 604 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 TRMOQ9BU70 441 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 EML4Q9HC35 981 aaKnown RBP15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 HHATLQ9HCP6 504 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 SIRT3Q9NTG7 399 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 NTMQ9P121 344 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 FAF1Q9UNN5 650 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 CARD8Q9Y2G2 431 aa15.71■□□□□ 0.11
SHKBP1-223ENST00000600552 USF3Q68DE3 2245 aa15.71■□□□□ 0.1
SHKBP1-223ENST00000600552 FAM171A2A8MVW0 826 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 SCAMP2O15127 329 aaKnown RBP15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 ADAMDEC1O15204 470 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 SKAP2O75563 359 aaPredicted RBP15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 C6orf47O95873 294 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 PPP3CBP16298 524 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 DDX5P17844 614 aaKnown RBP15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 PSMA4P25789 261 aaKnown RBP15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 MAPK1P28482 360 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 SOAT1P35610 550 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 FRKP42685 505 aaPredicted RBP15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 PTH2RP49190 550 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 CCR4P51679 360 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 CAPRIN1Q14444 709 aaKnown RBP15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 PTGR1Q14914 329 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 TMEM201Q5SNT2 666 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 ZCCHC12Q6PEW1 402 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 MISPQ8IVT2 679 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 KRTCAP2Q8N6L1 136 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 TMCO5AQ8N6Q1 288 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 OR5AK3PQ8NH89 298 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 PPP1R14CQ8TAE6 165 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 ABHD3Q8WU67 409 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 CAVIN3Q969G5 261 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 MTERF3Q96E29 417 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 ZNF764Q96H86 408 aaPredicted RBP15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 APOPT1Q96IL0 206 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 COX4I2Q96KJ9 171 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 PPP3R2Q96LZ3 170 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 PPCSQ9HAB8 311 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 GLRX2Q9NS18 164 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 ATP6V1HQ9UI12 483 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 KCNE3Q9Y6H6 103 aa15.7■□□□□ 0.1
SHKBP1-223ENST00000600552 H3BNH8 94 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 ZNF195O14628 629 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 CLOCKO15516 846 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 CYP7B1O75881 506 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 LINGO3P0C6S8 592 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 AGTR1P30556 359 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 NR1H2P55055 460 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 TOMM34Q15785 309 aaPredicted RBP15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 PGS1Q32NB8 556 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 UGT3A2Q3SY77 523 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 IL23RQ5VWK5 629 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 CBLN3Q6UW01 205 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 NUFIP2Q7Z417 695 aaKnown RBP15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 TRABD2AQ86V40 505 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 TUSC5Q8IXB3 177 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 FNDC5Q8NAU1 212 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 S100PBPQ96BU1 408 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 TACO1Q9BSH4 297 aaKnown RBP15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 ACTRT3Q9BYD9 372 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 SRXN1Q9BYN0 137 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 PIGUQ9H490 435 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 CXorf36Q9H7Y0 433 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 TIGARQ9NQ88 270 aa15.69■□□□□ 0.1
SHKBP1-223ENST00000600552 IGHV3-15A0A0B4J1V0 119 aa15.68■□□□□ 0.1
SHKBP1-223ENST00000600552 C7orf72A4D263 438 aa15.68■□□□□ 0.1
SHKBP1-223ENST00000600552 C9JVG2 144 aa15.68■□□□□ 0.1
SHKBP1-223ENST00000600552 EFNA2O43921 213 aa15.68■□□□□ 0.1
SHKBP1-223ENST00000600552 NPHS1O60500 1241 aa15.68■□□□□ 0.1
SHKBP1-223ENST00000600552 CNOT4O95628 575 aaKnown RBP15.68■□□□□ 0.1
SHKBP1-223ENST00000600552 FGF4P08620 206 aa15.68■□□□□ 0.1
SHKBP1-223ENST00000600552 PABPC4LP0CB38 370 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms