RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 COL12A1Q99715 3063 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 UTP20O75691 2785 aaKnown RBP13.68□□□□□ -0.22
TRIM28-207ENST00000597136 NPIPA5A0A0B4J1W7 369 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 CENPVL1A0A0U1RR11 272 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 TCRBV5S2A0A599 114 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 ANKRD33BA6NCL7 494 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 AQP12BA6NM10 295 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 TMEM229AB2RXF0 380 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 B4DXG7 233 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 NPIPA7E9PJI5 369 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 NPIPA5E9PKD4 350 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 HS6ST1O60243 411 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 FADS1O60427 444 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 ABCB7O75027 752 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 TRIM3O75382 744 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-207ENST00000597136 UGT2B17O75795 530 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 UTS2O95399 124 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 OPN1SWP03999 348 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 NPIPA8P0DM63 369 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 RPS4Y1P22090 263 aaKnown RBP13.68□□□□□ -0.22
TRIM28-207ENST00000597136 TDGF1P3P51864 188 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 FOXK1P85037 733 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 ALDH6A1Q02252 535 aaKnown RBP13.68□□□□□ -0.22
TRIM28-207ENST00000597136 INAQ16352 499 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 MAPK14Q16539 360 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 APOOLQ6UXV4 268 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 CBLL1Q75N03 491 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 SPATA24Q86W54 205 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 ARMC8Q8IUR7 673 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 SIAH3Q8IW03 269 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 AQP12AQ8IXF9 295 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 PEX5LQ8IYB4 626 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 FAM98AQ8NCA5 519 aaKnown RBP13.68□□□□□ -0.22
TRIM28-207ENST00000597136 JSRP1Q96MG2 331 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-207ENST00000597136 SECISBP2Q96T21 854 aaKnown RBP13.68□□□□□ -0.22
TRIM28-207ENST00000597136 DOHHQ9BU89 302 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 SPATA5L1Q9BVQ7 753 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 HOXD1Q9GZZ0 328 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 DEFB127Q9H1M4 99 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 METTL7AQ9H8H3 244 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 UBQLN4Q9NRR5 601 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 AGPAT4Q9NRZ5 378 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 NPIPA1Q9UND3 350 aa13.68□□□□□ -0.22
TRIM28-207ENST00000597136 TCRBV3S1A0A5B6 114 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 LRRC3CA6NJW4 275 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 GNB5O14775 395 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 GLSO94925 669 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-207ENST00000597136 ZNF682O95780 498 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 CRYABP02511 175 aaKnown RBP13.67□□□□□ -0.22
TRIM28-207ENST00000597136 TBXA2RP21731 343 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 DCTP40126 519 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 ATP12AP54707 1039 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 GAS1P54826 345 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 PPIAP62937 165 aaKnown RBP13.67□□□□□ -0.22
TRIM28-207ENST00000597136 PLGLB1Q02325 96 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 MRPL49Q13405 166 aaKnown RBP13.67□□□□□ -0.22
TRIM28-207ENST00000597136 EFR3AQ14156 821 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 ZNF141Q15928 474 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 GRAMD1BQ3KR37 738 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 OR5M10Q6IEU7 315 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 EIF3MQ7L2H7 374 aaKnown RBP13.67□□□□□ -0.22
TRIM28-207ENST00000597136 TMEM251Q8N6I4 163 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 SMYD1Q8NB12 490 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 OR10Q1Q8NGQ4 319 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 OR52P1PQ8NH57 321 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 SLC26A7Q8TE54 656 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 RNF138Q8WVD3 245 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 TMCO6Q96DC7 493 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 RNF145Q96MT1 663 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 GNRHR2Q96P88 292 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 SLX1AQ9BQ83 275 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 TTTY12Q9BZ98 90 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 ADPRHL2Q9NX46 363 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 KLRF1Q9NZS2 232 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 SEC14L3Q9UDX4 400 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 RPS6KA6Q9UK32 745 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 IFT52Q9Y366 437 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 KIAA1549Q9HCM3 1950 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 DOPEY2Q9Y3R5 2298 aa13.67□□□□□ -0.22
TRIM28-207ENST00000597136 PRAMEF25A6NGN4 478 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 TPST1O60507 370 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 PRKD3O94806 890 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 DBIP07108 87 aaKnown RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 C8BP07358 591 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 THBS1P07996 1170 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 NGFRP08138 427 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 CELA3AP09093 270 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 PABPC4LP0CB38 370 aaKnown RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ZNF24P17028 368 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 CD247P20963 164 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 UQCRFS1P47985 274 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 SELENOWP63302 87 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ELF3P78545 371 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-207ENST00000597136 DUSP7Q16829 419 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 KLHL26Q53HC5 615 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ZNF311Q5JNZ3 666 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 PDZK1Q5T2W1 519 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 TMEM81Q6P7N7 255 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 ENPP6Q6UWR7 440 aa13.66□□□□□ -0.22
TRIM28-207ENST00000597136 MARCH3Q86UD3 253 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms