RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SAMHD1Q9Y3Z3 626 aaKnown RBP13.42□□□□□ -0.26
VRK3-212ENST00000596814 CHCHD2Q9Y6H1 151 aaPredicted RBP13.42□□□□□ -0.26
VRK3-212ENST00000596814 ACACAQ13085 2346 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 SAC3D1A6NKF1 404 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 CPSF4LA6NMK7 179 aaKnown RBP13.41□□□□□ -0.26
VRK3-212ENST00000596814 ADAM10O14672 748 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 FFAR1O14842 300 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 FMO6PO60774 539 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 ZNF23P17027 643 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 IFNA8P32881 189 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 EIF2S3P41091 472 aaKnown RBP13.41□□□□□ -0.26
VRK3-212ENST00000596814 CASRP41180 1078 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 PTDSS1P48651 473 aaKnown RBP13.41□□□□□ -0.26
VRK3-212ENST00000596814 HLCSP50747 726 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 CCR4P51679 360 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 PIN1Q13526 163 aaPredicted RBP13.41□□□□□ -0.26
VRK3-212ENST00000596814 DEFB109BQ30KR1 87 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 ENTPD8Q5MY95 495 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 BICRALQ6AI39 1079 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 TMEM81Q6P7N7 255 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 RTL4Q6ZR62 310 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 SPACA3Q8IXA5 215 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 NR4A3Q92570 626 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 SH3YL1Q96HL8 342 aaPredicted RBP13.41□□□□□ -0.26
VRK3-212ENST00000596814 SGCZQ96LD1 299 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 PRR14Q9BWN1 585 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 OSBPL11Q9BXB4 747 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 LAT2Q9GZY6 243 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 GALNT9Q9HCQ5 603 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 CTPS2Q9NRF8 586 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 STMN3Q9NZ72 180 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 RHCGQ9UBD6 479 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 U3KQV3 271 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 HEATR5AQ86XA9 2040 aa13.41□□□□□ -0.26
VRK3-212ENST00000596814 A6NL46 340 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 RRP8O43159 456 aaKnown RBP13.4□□□□□ -0.26
VRK3-212ENST00000596814 OIP5O43482 229 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 HCRTR2O43614 444 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 EIF4E2O60573 245 aaKnown RBP13.4□□□□□ -0.26
VRK3-212ENST00000596814 HTR2AP28223 471 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 CASP3P42574 277 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 ACAA2P42765 397 aaKnown RBP13.4□□□□□ -0.26
VRK3-212ENST00000596814 CYB561P49447 251 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 IST1P53990 364 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 GAS1P54826 345 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 CDH12P55289 794 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 ZNF117Q03924 483 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 EPS8Q12929 822 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 PPP1R8Q12972 351 aaKnown RBP13.4□□□□□ -0.26
VRK3-212ENST00000596814 SNTA1Q13424 505 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 RAPSNQ13702 412 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 AGAP7PQ5VUJ5 663 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 LPCAT4Q643R3 524 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 CBLN3Q6UW01 205 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 TSPYL5Q86VY4 417 aaPredicted RBP13.4□□□□□ -0.26
VRK3-212ENST00000596814 OFCC1Q8IZS5 231 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 ADAMTS16Q8TE57 1224 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 PAQR8Q8TEZ7 354 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 NRG4Q8WWG1 115 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 EME1Q96AY2 570 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 ARSGQ96EG1 525 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 AGAP4Q96P64 663 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 EPYCQ99645 322 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 CIB1Q99828 191 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 ZNF559Q9BR84 538 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 FNDC11Q9BVV2 318 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 POLR2J2Q9GZM3 115 aaKnown RBP13.4□□□□□ -0.26
VRK3-212ENST00000596814 POLR2J3Q9H1A7 115 aaKnown RBP13.4□□□□□ -0.26
VRK3-212ENST00000596814 SH2D2AQ9NP31 389 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 ANKRD10Q9NXR5 420 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 OAZ3Q9UMX2 235 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 NTNG1Q9Y2I2 539 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 SSUH2Q9Y2M2 353 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 WIF1Q9Y5W5 379 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 LYVE1Q9Y5Y7 322 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 CELSR3Q9NYQ7 3312 aa13.4□□□□□ -0.26
VRK3-212ENST00000596814 C17orf51A8MQB3 221 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 TNFRSF11BO00300 401 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 ADAM11O75078 769 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 OR5F1O95221 314 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 GADD45GO95257 159 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 H1F0P07305 194 aaKnown RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 FPR1P21462 350 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 DNAJA1P31689 397 aaKnown RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 RYKP34925 604 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 PTGDSP41222 190 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 SLC6A8P48029 635 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 OC90Q02509 493 aaPredicted RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 C17orf67Q0P5P2 114 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 LRRC36Q1X8D7 754 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 COLEC12Q5KU26 742 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 OGFRL1Q5TC84 451 aaPredicted RBP13.39□□□□□ -0.27
VRK3-212ENST00000596814 PRAMEF20Q5VT98 475 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 ISLR2Q6UXK2 745 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 CCDC81Q6ZN84 652 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 LINC00696Q6ZRV3 163 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 EPHX4Q8IUS5 362 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 PIK3C3Q8NEB9 887 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 OR5K1Q8NHB7 308 aa13.39□□□□□ -0.27
VRK3-212ENST00000596814 SDCCAG3Q96C92 435 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms