RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 C5orf58C9J3I9 102 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 NPIPB9F8W1W9 429 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 H0Y3Z8 333 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 ZNF264O43296 627 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 WDR1O75083 606 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 KRT34O76011 436 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 ACTL6AO96019 429 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 CSTAP01040 98 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 OPN1LWP04000 364 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 NUDT7P0C024 238 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 UBL4AP11441 157 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 LSP1P33241 339 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 P2RX1P51575 399 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 SMSP52788 366 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 MVDP53602 400 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 NUP107P57740 925 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 TXNL4AP83876 142 aaKnown RBP10.04□□□□□ -0.8
LIG1-211ENST00000596457 GANABQ14697 944 aaKnown RBP10.04□□□□□ -0.8
LIG1-211ENST00000596457 ZNF141Q15928 474 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 MAPK14Q16539 360 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 ZNF630Q2M218 657 aaPredicted RBP10.04□□□□□ -0.8
LIG1-211ENST00000596457 RPS26P11Q5JNZ5 115 aaPredicted RBP10.04□□□□□ -0.8
LIG1-211ENST00000596457 LRIF1Q5T3J3 769 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 CBLN3Q6UW01 205 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 RPTNQ6XPR3 784 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 B3GNT6Q6ZMB0 384 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 LRRC74BQ6ZQY2 392 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 SPATA21Q7Z572 469 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 RETREG3Q86VR2 466 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 PM20D2Q8IYS1 436 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 ULK2Q8IYT8 1036 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 MARVELD2Q8N4S9 558 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 WDYHV1Q96HA8 205 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 TRNT1Q96Q11 434 aaKnown RBP10.04□□□□□ -0.8
LIG1-211ENST00000596457 KLHDC3Q9BQ90 382 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 PIGQQ9BRB3 760 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 THUMPD3Q9BV44 507 aaKnown RBP10.04□□□□□ -0.8
LIG1-211ENST00000596457 TRIM8Q9BZR9 551 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 NMUR2Q9GZQ4 415 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 RUBCNLQ9H714 662 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 HHATLQ9HCP6 504 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 SAR1AQ9NR31 198 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 POLE3Q9NRF9 147 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.04□□□□□ -0.8
LIG1-211ENST00000596457 ARMCX1Q9P291 453 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 MRPS18CQ9Y3D5 142 aaKnown RBP10.04□□□□□ -0.8
LIG1-211ENST00000596457 ZNF337Q9Y3M9 751 aa10.04□□□□□ -0.8
LIG1-211ENST00000596457 MYO7BQ6PIF6 2116 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 IGLV3-32A0A0A0MS00 114 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 OR2M5A3KFT3 312 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 CLDN24A6NM45 220 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 AHRRA9YTQ3 701 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 KDM4EB2RXH2 506 aaPredicted RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 SEC14L5O43304 696 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 KIAA0513O60268 411 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 UBTFL6P0CB48 400 aaPredicted RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 GABRA1P14867 456 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 IL7RP16871 459 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 HOXB9P17482 250 aaPredicted RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 DRD4P21917 467 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 PPIBP23284 216 aaKnown RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 CHMP24386 653 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 RYKP34925 604 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 GFRA1P56159 465 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 B3GALT5-AS1P59052 145 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 CAPRIN1Q14444 709 aaKnown RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 FGFBP1Q14512 234 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 MAPRE2Q15555 327 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 RUNDC3AQ59EK9 446 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 NHSL2Q5HYW2 709 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 RTL6Q6ICC9 239 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 PPP4R4Q6NUP7 873 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 PLXDC2Q6UX71 529 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 DLEU7Q6UYE1 221 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 EIF3MQ7L2H7 374 aaKnown RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 CHMP1BQ7LBR1 199 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 SNX32Q86XE0 403 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 CCDC71Q8IV32 467 aaPredicted RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 POU5F2Q8N7G0 328 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 ATP6V1C2Q8NEY4 427 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 NFKBIDQ8NI38 313 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 WDR60Q8WVS4 1066 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 PHF3Q92576 2039 aaKnown RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 RND1Q92730 232 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 MAL2Q969L2 176 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 SDCCAG3Q96C92 435 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 TMEM19Q96HH6 336 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 DMRTA2Q96SC8 542 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 NPAS1Q99742 590 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 TTYH2Q9BSA4 534 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 SAP130Q9H0E3 1048 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 SLC38A1Q9H2H9 487 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 MTHFD2LQ9H903 347 aaPredicted RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 CACYBPQ9HB71 228 aaKnown RBP10.03□□□□□ -0.8
LIG1-211ENST00000596457 MED17Q9NVC6 651 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 COQ3Q9NZJ6 369 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 CALML5Q9NZT1 146 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 L3MBTL1Q9Y468 752 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 FAM215AQ9Y5M1 114 aa10.03□□□□□ -0.8
LIG1-211ENST00000596457 CAPN7Q9Y6W3 813 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms