RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 HPGDP15428 266 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 CEACAM8P31997 349 aaPredicted RBP10.07□□□□□ -0.8
VRK3-210ENST00000596121 CLDN20P56880 219 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 STX1BP61266 288 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 SQLEQ14534 574 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 ZNF630Q2M218 657 aaPredicted RBP10.07□□□□□ -0.8
VRK3-210ENST00000596121 HSP90B2PQ58FF3 399 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 C6orf10Q5SRN2 563 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 LRIF1Q5T3J3 769 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 RAET1LQ5VY80 246 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 C16orf62Q7Z3J2 963 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 RETREG3Q86VR2 466 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 TRIML2Q8N7C3 387 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 C9orf106Q8NAJ2 232 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 LILRB4Q8NHJ6 448 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 B4GALNT2Q8NHY0 566 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 TRIB1Q96RU8 372 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 RSPO3Q9BXY4 272 aaPredicted RBP10.07□□□□□ -0.8
VRK3-210ENST00000596121 SLC38A1Q9H2H9 487 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 IKZF5Q9H5V7 419 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 PTGES2Q9H7Z7 377 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 RMND5AQ9H871 391 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 MED17Q9NVC6 651 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 EXD2Q9NVH0 621 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 CELSR2Q9HCU4 2923 aa10.07□□□□□ -0.8
VRK3-210ENST00000596121 CRYBG3Q68DQ2 2970 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 HEATR5AQ86XA9 2040 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 CLCA1A8K7I4 914 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 DNAJA2O60884 412 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 ADAM11O75078 769 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 KRT75O95678 551 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 AK1P00568 194 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 OPN1LWP04000 364 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 VIMP08670 466 aaKnown RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 HOXD4P09016 255 aaPredicted RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 MSX1P28360 303 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 HTR1EP28566 365 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 PGM1P36871 562 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 TFF3Q07654 80 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 SKP2Q13309 424 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 GANABQ14697 944 aaKnown RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 BCL2A1Q16548 175 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 PLPPR5Q32ZL2 321 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 GLYR1Q49A26 553 aaPredicted RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 GPAT3Q53EU6 434 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 ATAD3BQ5T9A4 648 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 NSUN5P2Q63ZY6 315 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 SP5Q6BEB4 398 aaPredicted RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 DLEU7Q6UYE1 221 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 MTERF4Q7Z6M4 381 aaKnown RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 MISPQ8IVT2 679 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 PM20D2Q8IYS1 436 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 EID3Q8N140 333 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 ZNF619Q8N2I2 560 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 GTPBP8Q8N3Z3 284 aaPredicted RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 ZNF614Q8N883 585 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 OR10Q1Q8NGQ4 319 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 ZPLD1Q8TCW7 415 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 GPR119Q8TDV5 335 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 TRNT1Q96Q11 434 aaKnown RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 SIKE1Q9BRV8 207 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 TMEM45AQ9NWC5 275 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 VAPAQ9P0L0 249 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 L3MBTL1Q9Y468 752 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 WDR45Q9Y484 360 aa10.06□□□□□ -0.8
VRK3-210ENST00000596121 KLF2Q9Y5W3 355 aaPredicted RBP10.06□□□□□ -0.8
VRK3-210ENST00000596121 PKDREJQ9NTG1 2253 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 ARHGAP21Q5T5U3 1957 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 A0A1W2PP18 115 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 MBD3L4A6NDZ8 208 aaPredicted RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 MBD3L3A6NE82 208 aaPredicted RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 MBD3L5A6NJ08 208 aaPredicted RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 CD8B2A6NJW9 211 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 H0Y3Z8 333 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 GTPBP1O00178 669 aaKnown RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 CLIC1O00299 241 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 ANP32DO95626 131 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 NTN1O95631 604 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 TGM6O95932 706 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 AGR2O95994 175 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 SHC1P29353 583 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 CHRNB4P30926 498 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 PTGER4P35408 488 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 CRATP43155 626 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 P2RX1P51575 399 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 AGFG1P52594 562 aaKnown RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 ZNF136P52737 540 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 GYS2P54840 703 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 FOXF2Q12947 444 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 FGFBP1Q14512 234 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 RGNQ15493 299 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 RPS26P11Q5JNZ5 115 aaPredicted RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 RIPPLY2Q5TAB7 128 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 AAGABQ6PD74 315 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 ENPP6Q6UWR7 440 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 LRRC74BQ6ZQY2 392 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 GGNQ86UU5 652 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 UBQLNLQ8IYU4 475 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 ZNF527Q8NB42 609 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 FAM71CQ8NEG0 241 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms