RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	PGR	P06401	933 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	TMIGD3	P0DMS9	266 aa	Predicted RBP	11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	IDO1	P14902	403 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	MATN1	P21941	496 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	PSMA4	P25789	261 aa	Known RBP	11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	OPRM1	P35372	400 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	ATP12A	P54707	1039 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	CLDN20	P56880	219 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	ZNF117	Q03924	483 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	FUT5	Q11128	374 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	PDCD4	Q53EL6	469 aa	Known RBP	11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	HEPHL1	Q6MZM0	1159 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	HDX	Q7Z353	690 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	MTERF4	Q7Z6M4	381 aa	Known RBP	11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	GGN	Q86UU5	652 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	GRAMD2A	Q8IUY3	354 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	VPS37A	Q8NEZ2	397 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	B4GALNT2	Q8NHY0	566 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	ZBTB8A	Q96BR9	441 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	MARK4	Q96L34	752 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	C7orf26	Q96N11	449 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	OR52B2	Q96RD2	323 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	SLC35A5	Q9BS91	424 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	SFXN3	Q9BWM7	321 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	NMUR2	Q9GZQ4	415 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	ZNF350	Q9GZX5	532 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	HOXD1	Q9GZZ0	328 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	OR51I1	Q9H343	314 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	LIME1	Q9H400	295 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	VIPAS39	Q9H9C1	493 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	SDR39U1	Q9NRG7	319 aa	Predicted RBP	11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	MED17	Q9NVC6	651 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	JKAMP	Q9P055	326 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	AP4B1	Q9Y6B7	739 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	USH1C	Q9Y6N9	552 aa		11.99	□□□□□ -0.49
SREBF1-223	ENST00000584760	HRNR	Q86YZ3	2850 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	PRRC2A	P48634	2157 aa	Known RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	CENPVL1	A0A0U1RR11	272 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	SYT5	O00445	386 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	SEC14L5	O43304	696 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	TNFRSF21	O75509	655 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	CPSF4	O95639	269 aa	Known RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	LINGO3	P0C6S8	592 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	CDKN2C	P42773	168 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	RNF144A	P50876	292 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	ZNF41	P51814	821 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	AGFG1	P52594	562 aa	Known RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	CASP9	P55211	416 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	FOXD4	Q12950	439 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	ARHGAP11B	Q3KRB8	267 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	NXN	Q6DKJ4	435 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	CBLN3	Q6UW01	205 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	OLIG3	Q7RTU3	272 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	GCNT2	Q8N0V5	402 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	MEIOB	Q8N635	442 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	METTL25	Q8N6Q8	603 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	GLB1L3	Q8NCI6	653 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	PHOSPHO1	Q8TCT1	267 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	RNASE6	Q93091	150 aa	Known RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	OR52E6	Q96RD3	313 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	ZBTB18	Q99592	522 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	INPP5K	Q9BT40	448 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	ACBD3	Q9H3P7	528 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	SLCO1B3	Q9NPD5	702 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	KCNE5	Q9UJ90	142 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	ICAM5	Q9UMF0	924 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	DTNA	Q9Y4J8	743 aa		11.98	□□□□□ -0.49
SREBF1-223	ENST00000584760	ABCA2	Q9BZC7	2435 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	CCDC154	A6NI56	674 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	SLC22A20	A6NK97	555 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	HMGB1P1	B2RPK0	211 aa	Predicted RBP	11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	EEF1E1-BLOC1S5	C9J1V9	151 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760		H3BNH8	94 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	EEF1E1	O43324	174 aa	Known RBP	11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	KIAA0513	O60268	411 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	FCMR	O60667	390 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	STX11	O75558	287 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	TNFSF13	O75888	250 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	AGR2	O95994	175 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	GUSB	P08236	651 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	UQCRC1	P31930	480 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	KHK	P50053	298 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	SUMO3	P55854	103 aa	Predicted RBP	11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	EEFSEC	P57772	596 aa	Known RBP	11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	LRRC74A	Q0VAA2	488 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	ZNF141	Q15928	474 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	GSTA3	Q16772	222 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	NDUFAF6	Q330K2	333 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	PDZK1	Q5T2W1	519 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	EPGN	Q6UW88	154 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	C16orf62	Q7Z3J2	963 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	ZNF614	Q8N883	585 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	POC1B	Q8TC44	478 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	LRRC8C	Q8TDW0	803 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	SMPDL3B	Q92485	455 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	FIG4	Q92562	907 aa		11.97	□□□□□ -0.49
SREBF1-223	ENST00000584760	RAB8B	Q92930	207 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms