RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063		A0A1W2PRB8	838 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ISPD	A4D126	451 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063		A6NIN4	97 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	SLC16A5	O15375	505 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	NCR1	O76036	304 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	PTTG1	O95997	202 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	LIPF	P07098	398 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TNFSF4	P23510	183 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GPC1	P35052	558 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TARDBP	Q13148	414 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	HNRNPA0	Q13151	305 aa	Known RBP	10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	GPR176	Q14439	515 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	MED27	Q6P2C8	311 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ZNF517	Q6ZMY9	492 aa	Predicted RBP	10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	DPPA4	Q7L190	304 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	HORMAD2	Q8N7B1	307 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	AMER3	Q8N944	861 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	OR4D11	Q8NGI4	311 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CXorf40A	Q8TE69	158 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ASB15	Q8WXK1	588 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	EXOSC8	Q96B26	276 aa	Known RBP	10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	NUS1	Q96E22	293 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	PPP1R16A	Q96I34	528 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	QRSL1	Q9H0R6	528 aa	Known RBP	10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	CXorf36	Q9H7Y0	433 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	ANKRA2	Q9H9E1	313 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	PCDHGA5	Q9Y5G8	931 aa		10.84	□□□□□ -0.67
CDK5RAP3-231	ENST00000584063	TLR4	O00206	839 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TGM6	O95932	706 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CH25H	O95992	272 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SLC1A3	P43003	542 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SNRPD2	P62316	118 aa	Known RBP	10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PRKCD	Q05655	676 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	EIF4H	Q15056	248 aa	Known RBP	10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ZNF79	Q15937	498 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ZFP69	Q49AA0	526 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	PLAG1	Q6DJT9	500 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	KIAA1211L	Q6NV74	962 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TMPRSS11A	Q6ZMR5	421 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CCDC190	Q86UF4	302 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	HDDC3	Q8N4P3	179 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	OR4D10	Q8NGI6	311 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	C16orf78	Q8WTQ4	265 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TTC9	Q92623	222 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	OTULIN	Q96BN8	352 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ARSG	Q96EG1	525 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	LRIG1	Q96JA1	1093 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CITED4	Q96RK1	184 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	REEP4	Q9H6H4	257 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	DMRT3	Q9NQL9	472 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SLC23A2	Q9UGH3	650 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MRPS2	Q9Y399	296 aa	Known RBP	10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	KCNE2	Q9Y6J6	123 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	C1QTNF3-AMACR	E9PGA6	284 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SEC14L5	O43304	696 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CTAG2	O75638	210 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TBX6	O95947	436 aa	Predicted RBP	10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	IFI30	P13284	250 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ITGB7	P26010	798 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MAOB	P27338	520 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ZNF763	Q0D2J5	394 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063		Q5BKY6	102 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TMEM108	Q6UXF1	575 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	NUDT18	Q6ZVK8	323 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TMEM200A	Q86VY9	491 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ELP4	Q96EB1	424 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	RANBP3	Q9H6Z4	567 aa	Predicted RBP	10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	COMMD3	Q9UBI1	195 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	ZNF282	Q9UDV7	671 aa	Predicted RBP	10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	OR1A2	Q9Y585	309 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SCN3A	Q9NY46	2000 aa		10.83	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	C5orf58	C9J3I9	102 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	IFNW1	P05000	195 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	FURIN	P09958	794 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	IL7	P13232	177 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	XCR1	P46094	333 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SLA	Q13239	276 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TRA2A	Q13595	282 aa	Known RBP eCLIP	10.82	□□□□□ -0.68	1e-7	■□□□□ 8.1
CDK5RAP3-231	ENST00000584063	SPHAR	Q15513	63 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TSC22D1	Q15714	1073 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CLEC12A	Q5QGZ9	265 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	LYPD8	Q6UX82	237 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	FAM109A	Q8N4B1	249 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TP53I13	Q8NBR0	393 aa	Predicted RBP	10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	OR10J5	Q8NHC4	309 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	XAGE5	Q8WWM1	108 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TP53INP1	Q96A56	240 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	DIRAS2	Q96HU8	199 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	LURAP1	Q96LR2	239 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SLC6A18	Q96N87	628 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	F2RL3	Q96RI0	385 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	GFM1	Q96RP9	751 aa	Known RBP	10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	TSSK6	Q9BXA6	273 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SEMA4C	Q9C0C4	833 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	SCML1	Q9UN30	329 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	CORO2B	Q9UQ03	480 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	FRYL	O94915	3013 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063		A0A1W2PQ72	361 aa		10.82	□□□□□ -0.68
CDK5RAP3-231	ENST00000584063	MEIOC	A2RUB1	952 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms