RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	HPCAL1	P37235	193 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	SERPINB4	P48594	390 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	CARD18	P57730	90 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZNF117	Q03924	483 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZNF844	Q08AG5	666 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TP53BP2	Q13625	1128 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	CDC73	Q6P1J9	531 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	CBLN3	Q6UW01	205 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	PRSS57	Q6UWY2	283 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	LRIG3	Q6UXM1	1119 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	BEND4	Q6ZU67	534 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	NUFIP2	Q7Z417	695 aa	Known RBP	10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	PRIMA1	Q86XR5	153 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZNF614	Q8N883	585 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	OR2W6P	Q8NHA6	318 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	RFWD2	Q8NHY2	731 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	RAB3IL1	Q8TBN0	382 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ACTRT2	Q8TDY3	377 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TMEM171	Q8WVE6	324 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZNF764	Q96H86	408 aa	Predicted RBP	10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	KLHL15	Q96M94	604 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	C1orf50	Q9BV19	199 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	BTBD2	Q9BX70	525 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	GSX2	Q9BZM3	304 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	PAQR5	Q9NXK6	330 aa	Predicted RBP	10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	CARD8	Q9Y2G2	431 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	KCNE3	Q9Y6H6	103 aa		10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	NSD1	Q96L73	2696 aa	Predicted RBP	10.38	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ABCA2	Q9BZC7	2435 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	IGHV3-15	A0A0B4J1V0	119 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	C7orf72	A4D263	438 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	INAFM1	C9JVW0	142 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	KIF2A	O00139	706 aa	Predicted RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	HS3ST1	O14792	307 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	SCAMP2	O15127	329 aa	Known RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	PEX11A	O75192	247 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TUBB	P07437	444 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	LINGO3	P0C6S8	592 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	PPP3CB	P16298	524 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ATP6V1C1	P21283	382 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ASMT	P46597	345 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	PTGR1	Q14914	329 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TOMM34	Q15785	309 aa	Predicted RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZNF239	Q16600	458 aa	Known RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TMEM176B	Q3YBM2	270 aa	Predicted RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	SPDYE7P	Q495Y7	208 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ARL13A	Q5H913	290 aa	Predicted RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	PDSS1	Q5T2R2	415 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZCCHC23	Q6ZST2	131 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	R3HCC1L	Q7Z5L2	792 aa	Known RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ATG4D	Q86TL0	474 aa	Predicted RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	STK32C	Q86UX6	486 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TRABD2A	Q86V40	505 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TDRP	Q86YL5	185 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	MISP	Q8IVT2	679 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TUSC5	Q8IXB3	177 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TMCO5A	Q8N6Q1	288 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	OR5AK3P	Q8NH89	298 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	FBXO27	Q8NI29	283 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	AKAP1	Q92667	903 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	S100PBP	Q96BU1	408 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	REXO5	Q96IC2	774 aa	Known RBP	10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	CXorf36	Q9H7Y0	433 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	GLRX2	Q9NS18	164 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	SLC17A7	Q9P2U7	560 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	MID2	Q9UJV3	735 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	LAMP3	Q9UQV4	416 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TMED5	Q9Y3A6	229 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TRAF6	Q9Y4K3	522 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	USF3	Q68DE3	2245 aa		10.37	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114		A0A1W2PQD3	144 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	GTPBP1	O00178	669 aa	Known RBP	10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZNF195	O14628	629 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	CLOCK	O15516	846 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	EFNA2	O43921	213 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	SPAG7	O75391	227 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	SKAP2	O75563	359 aa	Predicted RBP	10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	SLU7	O95391	586 aa	Known RBP	10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	C6orf47	O95873	294 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	CCT3	P49368	545 aa	Known RBP	10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ATP5J2	P56134	94 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	CAPRIN1	Q14444	709 aa	Known RBP	10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	UGT3A2	Q3SY77	523 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	EXOSC6	Q5RKV6	272 aa	Known RBP	10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TMEM201	Q5SNT2	666 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	DCST2	Q5T1A1	773 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZCCHC12	Q6PEW1	402 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TFAP2E	Q6VUC0	442 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	KRTCAP2	Q8N6L1	136 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	MAPK1IP1L	Q8NDC0	245 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	RNF128	Q8TEB7	428 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	IGFBPL1	Q8WX77	278 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	NEUROG1	Q92886	237 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	ZNF524	Q96C55	264 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	C3orf30	Q96M34	536 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TACO1	Q9BSH4	297 aa	Known RBP	10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	TRMO	Q9BU70	441 aa		10.36	□□□□□ -0.75
CDK5RAP3-223	ENST00000582114	PIGU	Q9H490	435 aa		10.36	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms