RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 UQCRC1P31930 480 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 TSFMP43897 325 aaKnown RBP14.54□□□□□ -0.08
NUP88-207ENST00000573584 ZNF136P52737 540 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 GPR68Q15743 365 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 GAB4Q2WGN9 574 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 MTSS1LQ765P7 747 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 PFN4Q8NHR9 129 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 TRMT10AQ8TBZ6 339 aaKnown RBP14.54□□□□□ -0.08
NUP88-207ENST00000573584 ZNF431Q8TF32 576 aaPredicted RBP14.54□□□□□ -0.08
NUP88-207ENST00000573584 POF1BQ8WVV4 589 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 PTP4A1Q93096 173 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 KISS1RQ969F8 398 aaPredicted RBP14.54□□□□□ -0.08
NUP88-207ENST00000573584 MS4A4EQ96PG1 132 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 OR51V1Q9H2C8 321 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 ATP13A2Q9NQ11 1180 aa14.54□□□□□ -0.08
NUP88-207ENST00000573584 TBC1D3KA0A087X1G2 549 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 TBC1D3FA6NER0 549 aaPredicted RBP14.53□□□□□ -0.08
NUP88-207ENST00000573584 PLPP2O43688 288 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 FZD7O75084 574 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 MRPL3P09001 348 aaKnown RBP14.53□□□□□ -0.08
NUP88-207ENST00000573584 STOMP27105 288 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 DRD3P35462 400 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 CCNJQ5T5M9 372 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 TBC1D3GQ6DHY5 549 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 PYHIN1Q6K0P9 492 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 WDR88Q6ZMY6 472 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 RTL10Q7L3V2 364 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 RANBP3LQ86VV4 465 aaPredicted RBP14.53□□□□□ -0.08
NUP88-207ENST00000573584 TPRA1Q86W33 373 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 MFSD9Q8NBP5 474 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 KCT2Q8NC54 265 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 SUN5Q8TC36 379 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 SCMH1Q96GD3 660 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 TEAD3Q99594 435 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 DPAGT1Q9H3H5 408 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 GHITMQ9H3K2 345 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 MOSPD1Q9UJG1 213 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 MGAT4AQ9UM21 535 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 TRPM6Q9BX84 2022 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 TRAPPC13A5PLN9 417 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 SLC9B1P1A6NJY1 282 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 GPR89AB7ZAQ6 455 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 ICMTO60725 284 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 SOX30O94993 753 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 AGR2O95994 175 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 HNRNPA1P09651 372 aaKnown RBP eCLIP14.53□□□□□ -0.08
NUP88-207ENST00000573584 GKN3PP0CG01 181 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 GPR89BP0CG08 455 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 CCL5P13501 91 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 TJAP1Q5JTD0 557 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 LRRC25Q8N386 305 aaPredicted RBP14.53□□□□□ -0.08
NUP88-207ENST00000573584 LNX2Q8N448 690 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 OR11H7Q8NGC8 314 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 LYARQ9NX58 379 aaKnown RBP14.53□□□□□ -0.08
NUP88-207ENST00000573584 CLEC4AQ9UMR7 237 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 CHD7Q9P2D1 2997 aa14.53□□□□□ -0.08
NUP88-207ENST00000573584 C7orf66A4D0T2 115 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 FAM86C2PA6NEL3 165 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 PRR23D1E9PI22 279 aaPredicted RBP14.52□□□□□ -0.08
NUP88-207ENST00000573584 J3QLW9 94 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 PRR23D2P0DMB1 279 aaPredicted RBP14.52□□□□□ -0.08
NUP88-207ENST00000573584 ZNF19P17023 458 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 CD53P19397 219 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 PEBP1P30086 187 aaKnown RBP14.52□□□□□ -0.08
NUP88-207ENST00000573584 ACVR1BP36896 505 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 CAMK1Q14012 370 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 IRF4Q15306 451 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 DUSP5Q16690 384 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 SLC25A35Q3KQZ1 300 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 SLC36A2Q495M3 483 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 ESCO2Q56NI9 601 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 ZBTB37Q5TC79 503 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 SIGIRRQ6IA17 410 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 ZNF782Q6ZMW2 699 aaPredicted RBP14.52□□□□□ -0.08
NUP88-207ENST00000573584 DGLUCYQ7Z3D6 616 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 CCDC28AQ8IWP9 274 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 GPALPP1Q8IXQ4 340 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 C17orf47Q8NEP4 570 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 SMAP2Q8WU79 429 aaPredicted RBP14.52□□□□□ -0.08
NUP88-207ENST00000573584 TMEM239Q8WW34 195 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 HSD17B8Q92506 261 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 C4orf36Q96KX1 117 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 IFT27Q9BW83 186 aa14.52□□□□□ -0.08
NUP88-207ENST00000573584 MRPL39Q9NYK5 338 aaKnown RBP14.52□□□□□ -0.08
NUP88-207ENST00000573584 ZNF223Q9UK11 482 aaPredicted RBP14.52□□□□□ -0.08
NUP88-207ENST00000573584 A0A0G2JK05 382 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 SLC22A31A6NKX4 558 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 SCAMP1O15126 338 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 MID1O15344 667 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 RNGTTO60942 597 aaKnown RBP14.52□□□□□ -0.09
NUP88-207ENST00000573584 EEF1A1P68104 462 aaKnown RBP14.52□□□□□ -0.09
NUP88-207ENST00000573584 FOXK2Q01167 660 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 TRAM1Q15629 374 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 ARHGAP11BQ3KRB8 267 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 EIPR1Q53HC9 387 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 FCRLBQ6BAA4 426 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 LYPD4Q6UWN0 246 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 RPTNQ6XPR3 784 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 ADGRD2Q7Z7M1 963 aa14.52□□□□□ -0.09
NUP88-207ENST00000573584 OR4N5Q8IXE1 308 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms