RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TMEM154Q6P9G4 183 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 PRSS57Q6UWY2 283 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 ZYG11AQ6WRX3 759 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 STAC2Q6ZMT1 411 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 FRMD7Q6ZUT3 714 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 FAM214BQ7L5A3 538 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 P4HA3Q7Z4N8 544 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 GALNT10Q86SR1 603 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 SPATA24Q86W54 205 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 MEIOBQ8N635 442 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 OR2T11Q8NH01 316 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 OR4C3Q8NH37 302 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 ACMSDQ8TDX5 336 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 UBLCP1Q8WVY7 318 aaPredicted RBP6.02□□□□□ -1.45
VPS53-213ENST00000572334 STMN2Q93045 179 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 CIDECQ96AQ7 238 aaPredicted RBP6.02□□□□□ -1.45
VPS53-213ENST00000572334 ZNF524Q96C55 264 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 Q96MF0 132 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 FAM111AQ96PZ2 611 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 TMEM204Q9BSN7 226 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 TMEM109Q9BVC6 243 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 TUBB1Q9H4B7 451 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 UBTD1Q9HAC8 227 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 PLSCR4Q9NRQ2 329 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 GIMAP4Q9NUV9 329 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 ELOVL5Q9NYP7 299 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 EIF3LQ9Y262 564 aaKnown RBP6.02□□□□□ -1.45
VPS53-213ENST00000572334 TMED5Q9Y3A6 229 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 AP4B1Q9Y6B7 739 aa6.02□□□□□ -1.45
VPS53-213ENST00000572334 ARFGEF3Q5TH69 2177 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 A0A0J9YW62 118 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 C16orf97H3BN30 126 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 LINC01387J3KSC0 135 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 CASKO14936 926 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 ADAMDEC1O15204 470 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 OIP5O43482 229 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 GMFGO60234 142 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 PLIN3O60664 434 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 TBX19O60806 448 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SMPD2O60906 423 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SS18L1O75177 396 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 SKAP2O75563 359 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 OXSR1O95747 527 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 OPN1LWP04000 364 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SHBGP04278 402 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 NGFRP08138 427 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 NUDT17P0C025 328 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 PAX1P15863 534 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SDC1P18827 310 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 TBXA2RP21731 343 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SHC1P29353 583 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 ADSLP30566 484 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 GABRA3P34903 492 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 DNAJB13P59910 316 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 ZNF844Q08AG5 666 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 C17orf67Q0P5P2 114 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 BNIP1Q12981 228 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 HSPB3Q12988 150 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 PDE7AQ13946 482 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 CYLC2Q14093 348 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 CD226Q15762 336 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 DUSP5Q16690 384 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 PLPPR5Q32ZL2 321 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 C1QTNF12Q5T7M4 302 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 LGSNQ5TDP6 509 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 CLEC6AQ6EIG7 209 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 MFSD12Q6NUT3 480 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SEZ6L2Q6UXD5 910 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 IKBIPQ70UQ0 350 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 TRMT10CQ7L0Y3 403 aaKnown RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 GSPT2Q8IYD1 628 aaKnown RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 GTPBP8Q8N3Z3 284 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 CCNYL1Q8N7R7 359 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SMYD1Q8NB12 490 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SLC16A11Q8NCK7 471 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 OR10D3Q8NH80 312 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 LILRB1Q8NHL6 650 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 CDC26Q8NHZ8 85 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 NUDT8Q8WV74 236 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SLC9A6Q92581 669 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 PIGTQ969N2 578 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 PERPQ96FX8 193 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 C16orf58Q96GQ5 468 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 ZC3HAV1LQ96H79 300 aaKnown RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 ZNF764Q96H86 408 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 ZNF570Q96NI8 536 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 CCL19Q99731 98 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 MDFIQ99750 246 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 MED18Q9BUE0 208 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 GSX2Q9BZM3 304 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 Q9N2J8 555 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 MIEF1Q9NQG6 463 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SDHAF3Q9NRP4 125 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SIRT3Q9NTG7 399 aaPredicted RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 DDX18Q9NVP1 670 aaKnown RBP6.01□□□□□ -1.45
VPS53-213ENST00000572334 OXSMQ9NWU1 459 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 ZNF226Q9NYT6 803 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 SENP1Q9P0U3 644 aa6.01□□□□□ -1.45
VPS53-213ENST00000572334 PSMC3IPQ9P2W1 217 aaPredicted RBP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms