RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 IMPDH1P20839 514 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 PTAFRP25105 342 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 GSTM5P46439 218 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 COMPP49747 757 aaPredicted RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 CCNG1P51959 295 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 PRKAA2P54646 552 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 PSMD4P55036 377 aaKnown RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 PKNOX1P55347 436 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 DNAJB13P59910 316 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 SLC18A2Q05940 514 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 ZNF155Q12901 538 aaPredicted RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 ZNF544Q6NX49 715 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 FAM180BQ6P0A1 224 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 RINLQ6ZS11 566 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 NUFIP2Q7Z417 695 aaKnown RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 GOLGA7Q7Z5G4 137 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 MARCH3Q86UD3 253 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 TUSC5Q8IXB3 177 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 CCDC116Q8IYX3 515 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 PTGR2Q8N8N7 351 aaPredicted RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 OR4N2Q8NGD1 307 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 WDR20Q8TBZ3 569 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 TRPC4APQ8TEL6 797 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 AENQ8WTP8 325 aaKnown RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 UBLCP1Q8WVY7 318 aaPredicted RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 METTL2AQ96IZ6 378 aaKnown RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 FOXN4Q96NZ1 517 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 ZNF382Q96SR6 550 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 MYNNQ9NPC7 610 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 GIMAP4Q9NUV9 329 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 CPSF2Q9P2I0 782 aaKnown RBP9.8□□□□□ -0.84
VPS53-207ENST00000570510 LGALS13Q9UHV8 139 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 PCTPQ9UKL6 214 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 SNX6Q9UNH7 406 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 ATP23Q9Y6H3 246 aa9.8□□□□□ -0.84
VPS53-207ENST00000570510 IGHV4-61A0A0C4DH41 118 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 LOC390937A0A1W2PQ73 354 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 TRIM77I1YAP6 450 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 ADAMDEC1O15204 470 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 NME6O75414 186 aaPredicted RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 PRKD3O94806 890 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 ENO1P06733 434 aaKnown RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 ZNF17P17021 662 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 ZNF23P17027 643 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 HSD17B3P37058 310 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 ZNF83P51522 516 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 ZNF41P51814 821 aaPredicted RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 VSNL1P62760 191 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 RAC1P63000 192 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 CHRNEQ04844 493 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 IFT88Q13099 833 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 MIDNQ504T8 468 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 TIMM23BQ5SRD1 257 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 FRG2Q64ET8 278 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 SHQ1Q6PI26 577 aaKnown RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 SEZ6L2Q6UXD5 910 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 Q6ZT83 130 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 P2RY8Q86VZ1 359 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 ZNF483Q8TF39 744 aaPredicted RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 ABHD3Q8WU67 409 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 SLC9A6Q92581 669 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 ERP27Q96DN0 273 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 FRG2BQ96QU4 278 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 HBEGFQ99075 208 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 INPP5KQ9BT40 448 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 MRPL1Q9BYD6 325 aaKnown RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 METTL17Q9H7H0 456 aaPredicted RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 ANKRA2Q9H9E1 313 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 HHATLQ9HCP6 504 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 FAM120CQ9NX05 1096 aaKnown RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 KLHL13Q9P2N7 655 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 UTS2RQ9UKP6 389 aa9.79□□□□□ -0.84
VPS53-207ENST00000570510 YLPM1P49750 1951 aaKnown RBP9.79□□□□□ -0.84
VPS53-207ENST00000570510 A0A087WZY1 265 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 CIB4A0PJX0 185 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 A8MT66 165 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 FAM157AC9JC47 383 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 FADS1O60427 444 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 RGS9O75916 674 aaPredicted RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 SNUPNO95149 360 aaKnown RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 ANGPTL1O95841 491 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 KRT6AP02538 564 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 KRT6BP04259 564 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 YES1P07947 543 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 SBK3P0C264 359 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 SFTPDP35247 375 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 KRT6CP48668 564 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 TRA2BP62995 288 aaKnown RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 GALNT1Q10472 559 aaPredicted RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 LCP2Q13094 533 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 TRAF3Q13114 568 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 ZNHIT3Q15649 155 aaPredicted RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 PDCD2Q16342 344 aaPredicted RBP9.78□□□□□ -0.84
VPS53-207ENST00000570510 CYP27C1Q4G0S4 372 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 PRR31Q5SQ13 230 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 ZNF678Q5SXM1 525 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 CPTPQ5TA50 214 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 NPSR1Q6W5P4 371 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 RNF165Q6ZSG1 346 aa9.78□□□□□ -0.84
VPS53-207ENST00000570510 SAMD14Q8IZD0 417 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms