RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ERAL1O75616 437 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 AKAP3O75969 853 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RECQL5O94762 991 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 GLCEO94923 617 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 VAMP5O95183 116 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SGPL1O95470 568 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TTC4O95801 387 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 C6orf47O95873 294 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PNPP00491 289 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 LALBAP00709 142 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 IGHV2-5P01817 119 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 IGHEP01854 428 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FGBP02675 491 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 NR3C1P04150 777 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ERCC1P07992 297 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 DHRS4L1P0CG22 281 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DUX4L2P0CJ85 424 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DUX4L3P0CJ86 424 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DUX4L4P0CJ87 422 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DUX4L5P0CJ88 424 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DUX4L6P0CJ89 424 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DUX4L7P0CJ90 424 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RD3LP0DJH9 198 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CETPP11597 493 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TYMPP19971 482 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 C4BPBP20851 252 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CCNOP22674 350 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 GABRR1P24046 479 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MYL9P24844 172 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CERS1P27544 350 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PTPN6P29350 595 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 NTSR1P30989 418 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MC5RP33032 325 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 BRCC3P46736 316 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RPL21P46778 160 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 RFX2P48378 723 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TGM4P49221 684 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RAB5CP51148 216 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 IDH3GP51553 393 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 CCR4P51679 360 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CCR6P51684 374 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PRELPP51888 382 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FGF8P55075 233 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 GPC5P78333 572 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 VLDLRP98155 873 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PSG6Q00889 435 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 IL5RAQ01344 420 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CAV1Q03135 178 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TWF1Q12792 350 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CNTN1Q12860 1018 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 IL24Q13007 206 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 LCP2Q13094 533 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SLAQ13239 276 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SCGB2A2Q13296 93 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SEMA5AQ13591 1074 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CTTNQ14247 550 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 GRB14Q14449 540 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SHBQ15464 509 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MEP1AQ16819 746 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FAM187BQ17R55 369 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZNF750Q32MQ0 723 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZNF404Q494X3 552 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 BCL7AQ4VC05 210 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 AKIRIN2Q53H80 203 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RNASE12Q5GAN4 147 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 MTX3Q5HYI7 312 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RBM48Q5RL73 367 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 SPOUT1Q5T280 376 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 PIP5KL1Q5T9C9 394 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RRAGBQ5VZM2 374 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZNF626Q68DY1 528 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 NAPEPLDQ6IQ20 393 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ACSM5Q6NUN0 579 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FAHD2BQ6P2I3 314 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 RHBDF2Q6PJF5 856 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 USP17L6PQ6QN14 398 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 SPESP1Q6UW49 350 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ATRAIDQ6UW56 229 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CD300LGQ6UXG3 332 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CYHR1Q6ZMK1 362 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZNF66Q6ZN08 573 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 GCNT7Q6ZNI0 430 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 RNF44Q7L0R7 432 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 EIF3MQ7L2H7 374 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 G2E3Q7L622 706 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TIPARPQ7Z3E1 657 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 PIWIL4Q7Z3Z4 852 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 NRARPQ7Z6K4 114 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CATSPERDQ86XM0 798 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZBTB8OSQ8IWT0 167 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DDIASQ8IXT1 998 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 GHDCQ8N2G8 530 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 METTL13Q8N6R0 699 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ZNF283Q8N7M2 679 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 KCTD6Q8NC69 237 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 DNAAF1Q8NEP3 725 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 OR8J3Q8NGG0 315 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 OR5K1Q8NHB7 308 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MCFD2Q8NI22 146 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 GRHL3Q8TE85 626 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms