RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MKLN1Q9UL63 735 aa13.56□□□□□ -0.24
VPS39-210ENST00000568357 CARD8Q9Y2G2 431 aa13.56□□□□□ -0.24
VPS39-210ENST00000568357 DTNAQ9Y4J8 743 aa13.56□□□□□ -0.24
VPS39-210ENST00000568357 A0A087WZY1 265 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 DVL2O14641 736 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 HCRTR2O43614 444 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 STX11O75558 287 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 RCBTB2O95199 551 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 TGDSO95455 350 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 IL6P05231 212 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 CTSSP25774 331 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 PSMA4P25789 261 aaKnown RBP13.55□□□□□ -0.24
VPS39-210ENST00000568357 CHI3L1P36222 383 aaPredicted RBP13.55□□□□□ -0.24
VPS39-210ENST00000568357 GPR68Q15743 365 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 PLPPR5Q32ZL2 321 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 NDUFAF6Q330K2 333 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 MTERF4Q7Z6M4 381 aaKnown RBP13.55□□□□□ -0.24
VPS39-210ENST00000568357 RNF130Q86XS8 419 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 DMRTC2Q8IXT2 367 aaPredicted RBP13.55□□□□□ -0.24
VPS39-210ENST00000568357 ZNF527Q8NB42 609 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 POC1BQ8TC44 478 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 CKAP2Q8WWK9 683 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 ZNF524Q96C55 264 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 ZG16BQ96DA0 208 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 TM9SF2Q99805 663 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 NMUR2Q9GZQ4 415 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 HHATLQ9HCP6 504 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 SLC6A13Q9NSD5 602 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 ICAM5Q9UMF0 924 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 AP4B1Q9Y6B7 739 aa13.55□□□□□ -0.24
VPS39-210ENST00000568357 KIAA1549Q9HCM3 1950 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 NUP214P35658 2090 aaPredicted RBP13.54□□□□□ -0.24
VPS39-210ENST00000568357 CENPVL1A0A0U1RR11 272 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 SYT5O00445 386 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 HMGN4O00479 90 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 SEC14L5O43304 696 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 TNFRSF21O75509 655 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 UGT2B17O75795 530 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 AK1P00568 194 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 OPN1LWP04000 364 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 LINGO3P0C6S8 592 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 TMIGD3P0DMS9 266 aaPredicted RBP13.54□□□□□ -0.24
VPS39-210ENST00000568357 POLR2JP52435 117 aaKnown RBP13.54□□□□□ -0.24
VPS39-210ENST00000568357 AQP5P55064 265 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 FUT5Q11128 374 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 SNTB1Q13884 538 aaKnown RBP13.54□□□□□ -0.24
VPS39-210ENST00000568357 ZNF141Q15928 474 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 MAPK14Q16539 360 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 PDZK1Q5T2W1 519 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 AP1ARQ63HQ0 302 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 TYW3Q6IPR3 259 aaKnown RBP13.54□□□□□ -0.24
VPS39-210ENST00000568357 C16orf62Q7Z3J2 963 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 GGNQ86UU5 652 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 MIER2Q8N344 545 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 GTPBP8Q8N3Z3 284 aaPredicted RBP13.54□□□□□ -0.24
VPS39-210ENST00000568357 MEIOBQ8N635 442 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 SMPDL3BQ92485 455 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 FIG4Q92562 907 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 VPS33AQ96AX1 596 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 ZBTB8AQ96BR9 441 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 ROPN1LQ96C74 230 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 INTS12Q96CB8 462 aaKnown RBP13.54□□□□□ -0.24
VPS39-210ENST00000568357 ZNF845Q96IR2 970 aaPredicted RBP13.54□□□□□ -0.24
VPS39-210ENST00000568357 MAGEB18Q96M61 343 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 ZNF350Q9GZX5 532 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 TCF7L2Q9NQB0 619 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 EXD2Q9NVH0 621 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 ZNF446Q9NWS9 450 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 FBN3Q75N90 2809 aa13.54□□□□□ -0.24
VPS39-210ENST00000568357 C7orf72A4D263 438 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 SERINC4A6NH21 518 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 H3BNH8 94 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 GTPBP1O00178 669 aaKnown RBP13.53□□□□□ -0.24
VPS39-210ENST00000568357 RFXANKO14593 260 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 EFNA2O43921 213 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 AGR2O95994 175 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 IL18BPO95998 194 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 ZNF17P17021 662 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 IL11P20809 199 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 OPRM1P35372 400 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 ZNF41P51814 821 aaPredicted RBP13.53□□□□□ -0.24
VPS39-210ENST00000568357 EEFSECP57772 596 aaKnown RBP13.53□□□□□ -0.24
VPS39-210ENST00000568357 LRRC74AQ0VAA2 488 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 TOMM34Q15785 309 aaPredicted RBP13.53□□□□□ -0.24
VPS39-210ENST00000568357 COX20Q5RI15 118 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 ATAD3BQ5T9A4 648 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 CHMP1BQ7LBR1 199 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 GRAMD2AQ8IUY3 354 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 GCNT2Q8N0V5 402 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 TRIML2Q8N7C3 387 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 ZNF614Q8N883 585 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 PNPT1Q8TCS8 783 aaKnown RBP13.53□□□□□ -0.24
VPS39-210ENST00000568357 GPR119Q8TDV5 335 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 RNF145Q96MT1 663 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 CCDC28BQ9BUN5 200 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 PINK1Q9BXM7 581 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 SAP130Q9H0E3 1048 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 JKAMPQ9P055 326 aa13.53□□□□□ -0.24
VPS39-210ENST00000568357 PCNX3Q9H6A9 2034 aa13.52□□□□□ -0.24
VPS39-210ENST00000568357 CACNA1CQ13936 2221 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms