RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 OR10D3Q8NH80 312 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 MIPOL1Q8TD10 442 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 TESCQ96BS2 214 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 SH3YL1Q96HL8 342 aaPredicted RBP13.34□□□□□ -0.27
CLN3-213ENST00000565047 TEX37Q96LM6 180 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 RNF145Q96MT1 663 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 FOXC2Q99958 501 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 HOXD1Q9GZZ0 328 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 OPN3Q9H1Y3 402 aaPredicted RBP13.34□□□□□ -0.27
CLN3-213ENST00000565047 CCM2LQ9NUG4 571 aaPredicted RBP13.34□□□□□ -0.27
CLN3-213ENST00000565047 FAF1Q9UNN5 650 aaPredicted RBP13.34□□□□□ -0.27
CLN3-213ENST00000565047 ZFHX3Q15911 3703 aa13.34□□□□□ -0.27
CLN3-213ENST00000565047 AKAP6Q13023 2319 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 SIAH2O43255 324 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 FCMRO60667 390 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 ALDOCP09972 364 aaKnown RBP13.33□□□□□ -0.28
CLN3-213ENST00000565047 SHC1P29353 583 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 CCKARP32238 428 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 ART1P52961 327 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 SLC18A1P54219 525 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 RPS26P62854 115 aaKnown RBP13.33□□□□□ -0.28
CLN3-213ENST00000565047 STX3Q13277 289 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 TOMM34Q15785 309 aaPredicted RBP13.33□□□□□ -0.28
CLN3-213ENST00000565047 PGS1Q32NB8 556 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 HEPHL1Q6MZM0 1159 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 WDR75Q8IWA0 830 aaKnown RBP13.33□□□□□ -0.28
CLN3-213ENST00000565047 ZNF610Q8N9Z0 462 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 GPR119Q8TDV5 335 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 SMPDL3BQ92485 455 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 MBD6Q96DN6 1003 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 MARK4Q96L34 752 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 NUF2Q9BZD4 464 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 NMUR2Q9GZQ4 415 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 PLSCR4Q9NRQ2 329 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 TESMINQ9Y4I5 508 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 DTNAQ9Y4J8 743 aa13.33□□□□□ -0.28
CLN3-213ENST00000565047 ABCA4P78363 2273 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 CENPVL1A0A0U1RR11 272 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 PRSS51A0A1B0GVH4 220 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 SH3D21A4FU49 640 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 SDHDO14521 159 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 EIF1AYO14602 144 aaKnown RBP13.32□□□□□ -0.28
CLN3-213ENST00000565047 SS18L1O75177 396 aaPredicted RBP13.32□□□□□ -0.28
CLN3-213ENST00000565047 OPN1LWP04000 364 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 GUSBP08236 651 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 KRT16P08779 473 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 HPGDP15428 266 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 CD1EP15812 388 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 LBPP18428 481 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 MATN1P21941 496 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 ADH6P28332 368 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 CD79BP40259 229 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 RNF144AP50876 292 aaPredicted RBP13.32□□□□□ -0.28
CLN3-213ENST00000565047 P2RX1P51575 399 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 RPS3AP61247 264 aaKnown RBP13.32□□□□□ -0.28
CLN3-213ENST00000565047 CASP8Q14790 479 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 ZNF141Q15928 474 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 ARHGAP11BQ3KRB8 267 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 SPDYE7PQ495Y7 208 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 SLC25A53Q5H9E4 307 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 ESPNLQ6ZVH7 1005 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 FAM214BQ7L5A3 538 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 CROCCP2Q86T23 111 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 CNEP1R1Q8N9A8 125 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 OR2V1Q8NHB1 315 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 PHOSPHO1Q8TCT1 267 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 ARSGQ96EG1 525 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 WFIKKN1Q96NZ8 548 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 ZNF350Q9GZX5 532 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 KCNK9Q9NPC2 374 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 ELOVL5Q9NYP7 299 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 CARD8Q9Y2G2 431 aa13.32□□□□□ -0.28
CLN3-213ENST00000565047 PRRC2AP48634 2157 aaKnown RBP13.31□□□□□ -0.28
CLN3-213ENST00000565047 RNF103-CHMP3A0A140T963 221 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 TMEM120BA0PK00 339 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 PRAMEF27A3QJZ7 478 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 DEFB108AA8MXU0 73 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 TNFSF11O14788 317 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 CFLARO15519 480 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 CXCL13O43927 109 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 UGT2B17O75795 530 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 SMNDC1O75940 238 aaKnown RBP eCLIP13.31□□□□□ -0.28
CLN3-213ENST00000565047 ATE1O95260 518 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 PRKCAP17252 672 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 ATP6V1C1P21283 382 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 IL12AP29459 219 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 UGT2B10P36537 528 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 EIF1P41567 113 aaKnown RBP13.31□□□□□ -0.28
CLN3-213ENST00000565047 EIF1AXP47813 144 aaKnown RBP13.31□□□□□ -0.28
CLN3-213ENST00000565047 CPA2P48052 419 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 ZNF41P51814 821 aaPredicted RBP13.31□□□□□ -0.28
CLN3-213ENST00000565047 SUMO3P55854 103 aaPredicted RBP13.31□□□□□ -0.28
CLN3-213ENST00000565047 SIRPAP78324 504 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 PLAURQ03405 335 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 FUT5Q11128 374 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 FOXF1Q12946 379 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 MAPK14Q16539 360 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 NDUFAF6Q330K2 333 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 SPANXN4Q5MJ08 99 aa13.31□□□□□ -0.28
CLN3-213ENST00000565047 BEND6Q5SZJ8 279 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms