RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 LIPT1Q9Y234 373 aa12.11□□□□□ -0.47
CLK3-216ENST00000564468 VDAC3Q9Y277 283 aa12.11□□□□□ -0.47
CLK3-216ENST00000564468 ZNF337Q9Y3M9 751 aa12.11□□□□□ -0.47
CLK3-216ENST00000564468 TACC2O95359 2948 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 FAM234BA2RU67 622 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 C7orf72A4D263 438 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 NKX2-6A6NCS4 301 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 CLCA1A8K7I4 914 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 C9JVG2 144 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 NPIPB9F8W1W9 429 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 H3BML4 177 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 GMFGO60234 142 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 NUDT14O95848 222 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 IL18BPO95998 194 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 ZCCHC18P0CG32 403 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 PRF1P14222 555 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 OPRM1P35372 400 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 PEX19P40855 299 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 ZNF141Q15928 474 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 HSP90B2PQ58FF3 399 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 OR2A2Q6IF42 318 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 MEX3BQ6ZN04 569 aaKnown RBP12.1□□□□□ -0.47
CLK3-216ENST00000564468 P4HA3Q7Z4N8 544 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 GDF7Q7Z4P5 450 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 GRAMD2AQ8IUY3 354 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 UBQLNLQ8IYU4 475 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 GTPBP8Q8N3Z3 284 aaPredicted RBP12.1□□□□□ -0.47
CLK3-216ENST00000564468 TOR1AIP2Q8NFQ8 470 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 ROPN1LQ96C74 230 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 SIKE1Q9BRV8 207 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 INPP5KQ9BT40 448 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 ZNF350Q9GZX5 532 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 TMEM45AQ9NWC5 275 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 PAQR5Q9NXK6 330 aaPredicted RBP12.1□□□□□ -0.47
CLK3-216ENST00000564468 FOXD3Q9UJU5 478 aaPredicted RBP12.1□□□□□ -0.47
CLK3-216ENST00000564468 WDR45Q9Y484 360 aa12.1□□□□□ -0.47
CLK3-216ENST00000564468 PDZD2O15018 2839 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 CCDC168Q8NDH2 2452 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 NPIPA5A0A0B4J1W7 369 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 SERINC4A6NH21 518 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 NPIPA7E9PJI5 369 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 C19orf84I3L1E1 186 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 ZNF264O43296 627 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 TNFRSF21O75509 655 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 RCBTB2O95199 551 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 CRHP06850 196 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 NPIPA8P0DM63 369 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 TMIGD3P0DMS9 266 aaPredicted RBP12.09□□□□□ -0.47
CLK3-216ENST00000564468 UBL4AP11441 157 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 BMP5P22003 454 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 ME2P23368 584 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 ADH6P28332 368 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 CDKN2CP42773 168 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 ATP4BP51164 291 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 CASP9P55211 416 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 ZNF117Q03924 483 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 TFF3Q07654 80 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 CD226Q15762 336 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 TMEM44Q2T9K0 475 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 PLPPR5Q32ZL2 321 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 GPAT3Q53EU6 434 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 PDSS1Q5T2R2 415 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 PDZK1Q5T2W1 519 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 AP1ARQ63HQ0 302 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 ARSKQ6UWY0 536 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 RNF130Q86XS8 419 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 LIX1LQ8IVB5 337 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 ZNF619Q8N2I2 560 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 PMM1Q92871 262 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 RAB8BQ92930 207 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 EBF4Q9BQW3 602 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 SAP130Q9H0E3 1048 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 RABEP2Q9H5N1 569 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 MED17Q9NVC6 651 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 THUMPD1Q9NXG2 353 aaKnown RBP12.09□□□□□ -0.47
CLK3-216ENST00000564468 CLCF1Q9UBD9 225 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 MKLN1Q9UL63 735 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 TRIM33Q9UPN9 1127 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 CARD8Q9Y2G2 431 aa12.09□□□□□ -0.47
CLK3-216ENST00000564468 GPC6Q9Y625 555 aaPredicted RBP12.09□□□□□ -0.47
CLK3-216ENST00000564468 CSMD2Q7Z408 3487 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 HMGN4O00479 90 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 SEC14L5O43304 696 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 KIAA0513O60268 411 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 FCMRO60667 390 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 CSTAP01040 98 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 GSNP06396 782 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 SNRPB2P08579 225 aaKnown RBP12.08□□□□□ -0.48
CLK3-216ENST00000564468 ASCL1P50553 236 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 ZNF136P52737 540 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 RAC1P63000 192 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 CBFBQ13951 182 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 SGCBQ16585 318 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 TIGD2Q4W5G0 525 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 C6orf10Q5SRN2 563 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLK3-216ENST00000564468 EIF3MQ7L2H7 374 aaKnown RBP12.08□□□□□ -0.48
CLK3-216ENST00000564468 TMCO5AQ8N6Q1 288 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 C9orf106Q8NAJ2 232 aa12.08□□□□□ -0.48
CLK3-216ENST00000564468 ACBD4Q8NC06 268 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms