RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SHC1P29353 583 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 NCBP2P52298 156 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS4A-203ENST00000564399 MANFP55145 182 aaKnown RBP6.45□□□□□ -1.38
VPS4A-203ENST00000564399 HEPACAMQ14CZ8 416 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 ARL13AQ5H913 290 aaPredicted RBP6.45□□□□□ -1.38
VPS4A-203ENST00000564399 MROH9Q5TGP6 573 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 TMEM107Q6UX40 140 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 CCDC91Q7Z6B0 441 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 UBE2J2Q8N2K1 259 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 SLC43A2Q8N370 569 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 MMGT1Q8N4V1 131 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 CDC26Q8NHZ8 85 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 POC1BQ8TC44 478 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 FAM110BQ8TC76 370 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 GPR151Q8TDV0 419 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 ACTRT2Q8TDY3 377 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 FBXO17Q96EF6 278 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 VRK1Q99986 396 aaPredicted RBP6.45□□□□□ -1.38
VPS4A-203ENST00000564399 INPP5KQ9BT40 448 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 C1QTNF6Q9BXI9 259 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 BHLHE41Q9C0J9 482 aaPredicted RBP6.45□□□□□ -1.38
VPS4A-203ENST00000564399 CXorf36Q9H7Y0 433 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 FKRPQ9H9S5 495 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 EQTNQ9NQ60 294 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 KLHL9Q9P2J3 617 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 RNF14Q9UBS8 474 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 PCTPQ9UKL6 214 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 NFU1Q9UMS0 254 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 C19orf53Q9UNZ5 99 aaPredicted RBP6.45□□□□□ -1.38
VPS4A-203ENST00000564399 PPP2R2CQ9Y2T4 447 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 SNX24Q9Y343 169 aa6.45□□□□□ -1.38
VPS4A-203ENST00000564399 NOTCH1P46531 2555 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 A0A096LPK6 155 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 A0A0A6YYJ9 748 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 LOC390937A0A1W2PQ73 354 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 LRP5LA4QPB2 252 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SLCO1B7G3V0H7 640 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 UPK1AO00322 258 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF195O14628 629 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SMAD9O15198 467 aaKnown RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 TP73O15350 636 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 RGS14O43566 566 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 KLHL2O95198 593 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 PGM3O95394 542 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 OXSR1O95747 527 aaPredicted RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 NUDT14O95848 222 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 OTCP00480 354 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 IGKV1D-16P01601 117 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 TSPAN8P19075 237 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 EDNRAP25101 427 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SLC7A1P30825 629 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 APOBEC3AP31941 199 aaPredicted RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 EIF1P41567 113 aaKnown RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 ACSM2AQ08AH3 577 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 RASGEF1BQ0VAM2 473 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 FOXF1Q12946 379 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SLC29A2Q14542 456 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 MLC1Q15049 377 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 GGTA1PQ4G0N0 100 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 PDLIM3Q53GG5 364 aaPredicted RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 FAM219BQ5XKK7 198 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 ACSM2BQ68CK6 577 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 RINLQ6ZS11 566 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 CYS1Q717R9 158 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 RPS27LQ71UM5 84 aaKnown RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SLC35F6Q8N357 371 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF433Q8N7K0 673 aaPredicted RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 ZNF540Q8NDQ6 660 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 OR4C3Q8NH37 302 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 B4GALNT2Q8NHY0 566 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 FBXO27Q8NI29 283 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 C16orf78Q8WTQ4 265 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 ZFAND2BQ8WV99 257 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 PIK3R3Q92569 461 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 MRRFQ96E11 262 aaKnown RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SORCS2Q96PQ0 1159 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 KLHDC3Q9BQ90 382 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 PSD2Q9BQI7 771 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SOX7Q9BT81 388 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 LMF2Q9BU23 707 aaKnown RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 EBPLQ9BY08 206 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 BPESC1Q9GZL8 116 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 VPS11Q9H270 941 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 METTL17Q9H7H0 456 aaPredicted RBP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 NTMQ9P121 344 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SNX12Q9UMY4 172 aa6.44□□□□□ -1.38
VPS4A-203ENST00000564399 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS4A-203ENST00000564399 SVEP1Q4LDE5 3571 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 NPIPA5A0A0B4J1W7 369 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 A0A1W2PNR3 127 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 TTC36A6NLP5 189 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 MYO1GB0I1T2 1018 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 NPIPA7E9PJI5 369 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 STX16-NPEPL1H3BU86 382 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 MANBAO00462 879 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 PPP6CO00743 305 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 SCDO00767 359 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 STX16O14662 325 aa6.43□□□□□ -1.38
VPS4A-203ENST00000564399 EIF3HO15372 352 aaKnown RBP eCLIP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms