RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 OVCA2Q8WZ82 227 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SMPDL3BQ92485 455 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SMARCD2Q92925 531 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 MIB2Q96AX9 1013 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ASB9Q96DX5 294 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SMIM12Q96EX1 92 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SLC38A2Q96QD8 506 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 NPAS2Q99743 824 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 NAPGQ99747 312 aaPredicted RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 EGFL8Q99944 293 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SLC35A5Q9BS91 424 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 FICDQ9BVA6 458 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 RNF26Q9BY78 433 aaPredicted RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 MAGT1Q9H0U3 335 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 S1PR5Q9H228 398 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 DCLRE1BQ9H816 532 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ZNF556Q9HAH1 456 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 APMAPQ9HDC9 416 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 FZD3Q9NPG1 666 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 DYRK4Q9NR20 520 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SLC38A7Q9NVC3 462 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 NPAP1Q9NZP6 1156 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 PISDQ9UG56 409 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 SMPXQ9UHP9 88 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ZNF639Q9UID6 485 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 RWDD2AQ9UIY3 292 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 MOKQ9UQ07 419 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 KCNK6Q9Y257 313 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 MRPS18BQ9Y676 258 aaKnown RBP4.7□□□□□ -1.66
VPS35-205ENST00000563984 AUP1Q9Y679 476 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 LMTK2Q8IWU2 1503 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 DAPK1P53355 1430 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ZNF532Q9HCE3 1301 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 NEURL4Q96JN8 1562 aa4.7□□□□□ -1.66
VPS35-205ENST00000563984 ABCC12Q96J65 1359 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ZMYM2Q9UBW7 1377 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 TOP2AP11388 1531 aaKnown RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 LOC100509620A0A075B734 347 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 C13orf42A0A1B0GVH6 325 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 OR2W5A6NFC9 320 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 AGAP5A6NIR3 686 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 TRDCB7Z8K6 153 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 I3L4J1 428 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 GOSR2O14653 212 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ADAM10O14672 748 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 CLIC2O15247 247 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ST8SIA3O43173 380 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ADAM12O43184 909 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 FCMRO60667 390 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 RAMP3O60896 148 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 CXCL14O95715 111 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 PAK4O96013 591 aaPredicted RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 SERPINA1P01009 418 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 GH1P01241 217 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 SMIM10L1P0DMW3 83 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 G6PDP11413 515 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 CEACAM1P13688 526 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 EGR1P18146 543 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ADRA2CP18825 462 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 MMP8P22894 467 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 GABRR1P24046 479 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 GABRB3P28472 473 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 AKT2P31751 481 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 CHI3L1P36222 383 aaPredicted RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 GNPDA1P46926 289 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 SLC6A12P48065 614 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 GABRA4P48169 554 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ZNF75DP51815 510 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 NDST1P52848 882 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 TMEM33P57088 247 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 SNAP25P60880 206 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 RAE1P78406 368 aaKnown RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 MRPS11P82912 194 aaKnown RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 TMEM115Q12893 351 aaPredicted RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 DLG1Q12959 904 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 GRIK2Q13002 908 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 BIKQ13323 160 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ORC2Q13416 577 aaPredicted RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 CTTNQ14247 550 aaKnown RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 OXA1LQ15070 435 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 RBMS2Q15434 407 aaKnown RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 ATP6AP1Q15904 470 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 CALCRLQ16602 461 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 EXOC3L2Q2M3D2 409 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 TMEM249Q2WGJ8 235 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 COX19Q49B96 90 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 PTPN20Q4JDL3 420 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 C9orf135Q5VTT2 229 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 RESP18Q5W5W9 173 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 FAM90A2PQ658T7 463 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 TYW3Q6IPR3 259 aaKnown RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 REEP3Q6NUK4 255 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ACSM5Q6NUN0 579 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 LPCAT3Q6P1A2 487 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 TMEM81Q6P7N7 255 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 NHLRC1Q6VVB1 395 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 SPNS3Q6ZMD2 512 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 Q6ZPB1 254 aaPredicted RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 CFAP77Q6ZQR2 320 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 PAQR9Q6ZVX9 377 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms