RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 MTERF4Q7Z6M4 381 aaKnown RBP14.1□□□□□ -0.15
VPS39-203ENST00000561797 GGNQ86UU5 652 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 CNEP1R1Q8N9A8 125 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 RFWD2Q8NHY2 731 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 ACTRT2Q8TDY3 377 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 XAGE5Q8WWM1 108 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 RAB8BQ92930 207 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 ZBTB8AQ96BR9 441 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 MARK4Q96L34 752 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 RNF145Q96MT1 663 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 RBM24Q9BX46 236 aaKnown RBP14.1□□□□□ -0.15
VPS39-203ENST00000561797 CRIM1Q9NZV1 1036 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 MKLN1Q9UL63 735 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 DTNAQ9Y4J8 743 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 GPR45Q9Y5Y3 372 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 ADGRG4Q8IZF6 3080 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 A0A1W2PNV4 684 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 NPIPB9F8W1W9 429 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 FCMRO60667 390 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 STX11O75558 287 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 TNFSF13O75888 250 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 SMNDC1O75940 238 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS39-203ENST00000561797 PEX19P40855 299 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 EIF1AXP47813 144 aaKnown RBP14.09□□□□□ -0.15
VPS39-203ENST00000561797 P2RX1P51575 399 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 SIRPAP78324 504 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 ARHGAP11BQ3KRB8 267 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 PDZK1Q5T2W1 519 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 OR2A2Q6IF42 318 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 VWA1Q6PCB0 445 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 KIF18BQ86Y91 864 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 GTPBP8Q8N3Z3 284 aaPredicted RBP14.09□□□□□ -0.15
VPS39-203ENST00000561797 TMCO5AQ8N6Q1 288 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 METTL25Q8N6Q8 603 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 CHDHQ8NE62 594 aaPredicted RBP14.09□□□□□ -0.15
VPS39-203ENST00000561797 LINC01560Q8TB33 94 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 FNDC9Q8TBE3 224 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 POC1BQ8TC44 478 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 PIWIL2Q8TC59 973 aaKnown RBP14.09□□□□□ -0.15
VPS39-203ENST00000561797 OR52E6Q96RD3 313 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 ZBTB18Q99592 522 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 SLC35A5Q9BS91 424 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 PIGMQ9H3S5 423 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 TMEM185BQ9H7F4 350 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 EXD2Q9NVH0 621 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 BTNL2Q9UIR0 455 aa14.09□□□□□ -0.15
VPS39-203ENST00000561797 TUBAL3A6NHL2 446 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 KLF11O14901 512 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 AK1P00568 194 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 C1QCP02747 245 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 GSNP06396 782 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 LINGO3P0C6S8 592 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 IL11P20809 199 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 PSMA4P25789 261 aaKnown RBP14.08□□□□□ -0.16
VPS39-203ENST00000561797 EEF1A1P68104 462 aaKnown RBP14.08□□□□□ -0.16
VPS39-203ENST00000561797 FOXF1Q12946 379 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 TTMPQ5BVD1 217 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 ATAD3BQ5T9A4 648 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 EEF1A1P5Q5VTE0 462 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 SAXO2Q658L1 398 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 MAVSQ7Z434 540 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 CDH24Q86UP0 819 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 MIPOL1Q8TD10 442 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 ATP6V1G3Q96LB4 118 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 CCDC115Q96NT0 180 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 OR52B2Q96RD2 323 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 PANX1Q96RD7 426 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 INPP5KQ9BT40 448 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 PRRG4Q9BZD6 226 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 GALNT8Q9NY28 637 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 KCNE5Q9UJ90 142 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 PACSIN3Q9UKS6 424 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 ICAM5Q9UMF0 924 aa14.08□□□□□ -0.16
VPS39-203ENST00000561797 ANKRD17O75179 2603 aaKnown RBP14.08□□□□□ -0.16
VPS39-203ENST00000561797 C7orf72A4D263 438 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 CCDC154A6NI56 674 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 TNFSF11O14788 317 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 ZNF264O43296 627 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 CXCL13O43927 109 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 DIAPH2O60879 1101 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 CYP7B1O75881 506 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 AQP8O94778 261 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 AGR2O95994 175 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 PGRP06401 933 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 CRHP06850 196 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 ME2P23368 584 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 SFTPDP35247 375 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 CDKN2CP42773 168 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 KHKP50053 298 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 CCR4P51679 360 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 RAC1P63000 192 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 TOMM34Q15785 309 aaPredicted RBP14.07□□□□□ -0.16
VPS39-203ENST00000561797 HEPHL1Q6MZM0 1159 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 ZNF621Q6ZSS3 439 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 BTLAQ7Z6A9 289 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 LILRA2Q8N149 483 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 OR10D3Q8NH80 312 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 FBXO27Q8NI29 283 aa14.07□□□□□ -0.16
VPS39-203ENST00000561797 GPR119Q8TDV5 335 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms