RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CALHM3Q86XJ0 350 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 PTOV1Q86YD1 416 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ARMC8Q8IUR7 673 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 DEFB107AQ8IZN7 70 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 C10orf111Q8N326 155 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 FADS6Q8N9I5 356 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 WDSUB1Q8N9V3 476 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 OR2M3Q8NG83 312 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 OR14L1PQ8NHC6 308 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 SLC26A7Q8TE54 656 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 SLC35B4Q969S0 331 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ZBTB8AQ96BR9 441 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 NTNG2Q96CW9 530 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 SH3YL1Q96HL8 342 aaPredicted RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 RNF145Q96MT1 663 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ZNF583Q96ND8 569 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 BARD1Q99728 777 aaKnown RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 OR2B2Q9GZK3 357 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 QRSL1Q9H0R6 528 aaKnown RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 C1orf21Q9H246 121 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 UBQLN3Q9H347 655 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 DSN1Q9H410 356 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 LDAHQ9H6V9 325 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ACKR4Q9NPB9 350 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 EXOSC3Q9NQT5 275 aaKnown RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 CMTM6Q9NX76 183 aa9.18□□□□□ -0.94
USP3-216ENST00000559873 ZNF443Q9Y2A4 671 aaPredicted RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 GPC6Q9Y625 555 aaPredicted RBP9.18□□□□□ -0.94
USP3-216ENST00000559873 TRGV5A0A0B4J1U4 118 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 CDHR4A6H8M9 788 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 C2orf72A6NCS6 295 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 ANKUB1A6NFN9 424 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 CYP7B1O75881 506 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 C1QL1O75973 258 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 STAMBPO95630 424 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 IGHG3P01860 377 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 UBTFL6P0CB48 400 aaPredicted RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 ZNF17P17021 662 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 PGCP20142 388 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 EIF1P41567 113 aaKnown RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 GSK3BP49841 420 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 GZMMP51124 257 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 PCBP3P57721 371 aaKnown RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 NCALDP61601 193 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 COPZ1P61923 177 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 SLC25A3Q00325 362 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 SKP2Q13309 424 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 MAPK14Q16539 360 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.17□□□□□ -0.94
USP3-216ENST00000559873 GLYR1Q49A26 553 aaPredicted RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 CMPK2Q5EBM0 449 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 RAET1LQ5VY80 246 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 ZNF324BQ6AW86 544 aaPredicted RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 OR5M10Q6IEU7 315 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 AAGABQ6PD74 315 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 GFRALQ6UXV0 394 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 ZNF836Q6ZNA1 936 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 ZNF550Q7Z398 422 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 SIAH3Q8IW03 269 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 MICU2Q8IYU8 434 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 GALNT11Q8NCW6 608 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 RBM15BQ8NDT2 890 aaKnown RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 ST6GALNAC3Q8NDV1 305 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 FAM71CQ8NEG0 241 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 TMEM234Q8WY98 164 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 LZICQ8WZA0 190 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 SARAFQ96BY9 339 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 C1GALT1C1Q96EU7 318 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 SFXN2Q96NB2 322 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 GNRHR2Q96P88 292 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 PIGQQ9BRB3 760 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 PINK1Q9BXM7 581 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 LAT2Q9GZY6 243 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 TSPAN10Q9H1Z9 355 aaPredicted RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 PIF1Q9H611 641 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 TAS2R10Q9NYW0 307 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 MED11Q9P086 117 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 TMEM181Q9P2C4 612 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 STOML1Q9UBI4 398 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 MAGEL2Q9UJ55 1249 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 KCNE5Q9UJ90 142 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 FBXL2Q9UKC9 423 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 PRDM4Q9UKN5 801 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 BAG5Q9UL15 447 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 ICAM5Q9UMF0 924 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 PRPF19Q9UMS4 504 aaKnown RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 CARD8Q9Y2G2 431 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 NTNG1Q9Y2I2 539 aa9.17□□□□□ -0.94
USP3-216ENST00000559873 MRPS18CQ9Y3D5 142 aaKnown RBP9.17□□□□□ -0.94
USP3-216ENST00000559873 SVILO95425 2214 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 NBEAQ8NFP9 2946 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 CFAP46Q8IYW2 2715 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 CENPVL1A0A0U1RR11 272 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 OR14I1A6ND48 311 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 CFAP73A6NFT4 308 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 SYT5O00445 386 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 EBAG9O00559 213 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 AQP7O14520 342 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 GYG2O15488 501 aa9.16□□□□□ -0.94
USP3-216ENST00000559873 SUSD5O60279 629 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms