RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-229	ENST00000557348	ZNF836	Q6ZNA1	936 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	GDPD3	Q7L5L3	318 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	IQCF2	Q8IXL9	164 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	SPERT	Q8NA61	448 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	PIGX	Q8TBF5	258 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	GNPDA2	Q8TDQ7	276 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	SAP25	Q8TEE9	199 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	ACOT11	Q8WXI4	607 aa	Predicted RBP	11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	RPL3L	Q92901	407 aa	Known RBP	11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	CCDC74A	Q96AQ1	378 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	WDFY2	Q96P53	400 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	SPRTN	Q9H040	489 aa	Predicted RBP	11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	FTSJ1	Q9UET6	329 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	PCDHGA3	Q9Y5H0	932 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	CEP192	Q8TEP8	1941 aa		11.73	□□□□□ -0.53
SHMT2-229	ENST00000557348	SEC14L5	O43304	696 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	NDUFB5	O43674	189 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	FCMR	O60667	390 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	SEMA7A	O75326	666 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	S1PR1	P21453	382 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	FBL	P22087	321 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	CHM	P24386	653 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	LCN1	P31025	176 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	DUSP3	P51452	185 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	CSTF1	Q05048	431 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	EXOSC7	Q15024	291 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	GPR68	Q15743	365 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	YIF1B	Q5BJH7	314 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	ARMCX4	Q5H9R4	360 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	ENTPD8	Q5MY95	495 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	ATAD3C	Q5T2N8	411 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	TMEM236	Q5W0B7	351 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	CASP12	Q6UXS9	341 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	TTLL10	Q6ZVT0	673 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	ZNF367	Q7RTV3	350 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	HDDC2	Q7Z4H3	204 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	RBM45	Q8IUH3	476 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	GRAMD2A	Q8IUY3	354 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	CACTIN-AS1	Q8N1I8	211 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348		Q8N9G6	341 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	KIAA1143	Q96AT1	154 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	VSTM2L	Q96N03	204 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	MCHR1	Q99705	422 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	DHRS9	Q9BPW9	319 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	CDADC1	Q9BWV3	514 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	NIPAL2	Q9H841	368 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	MAN2C1	Q9NTJ4	1040 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	CLN6	Q9NWW5	311 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	KLHL21	Q9UJP4	597 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	MRTO4	Q9UKD2	239 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	STUB1	Q9UNE7	303 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	MAU2	Q9Y6X3	613 aa		11.72	□□□□□ -0.53
SHMT2-229	ENST00000557348	TRAPPC13	A5PLN9	417 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	CDHR4	A6H8M9	788 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348		B8ZZF3	427 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	ARHGEF9	O43307	516 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	CRYZL1	O95825	349 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	IFNA16	P05015	189 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	CTSB	P07858	339 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	EPHA2	P29317	976 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	CSF2RB	P32927	897 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	RCVRN	P35243	200 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	NR4A2	P43354	598 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	SEPHS1	P49903	392 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	EMD	P50402	254 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	RAB25	P57735	213 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	SNRPG	P62308	76 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	MAT1A	Q00266	395 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	IKZF1	Q13422	519 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	SEC23B	Q15437	767 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	HLA-B	Q31612	363 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	FLYWCH1	Q4VC44	716 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	C19orf48	Q6RUI8	117 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	ZNF730	Q6ZMV8	503 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	ZNF517	Q6ZMY9	492 aa	Predicted RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	ZBTB46	Q86UZ6	589 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	RNF113B	Q8IZP6	322 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	MORN4	Q8NDC4	146 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	OR4D9	Q8NGE8	314 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	OR1L3	Q8NH93	324 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	PIGK	Q92643	395 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	ZNF559	Q9BR84	538 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	SLC30A2	Q9BRI3	323 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	RSPO3	Q9BXY4	272 aa	Predicted RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	QRSL1	Q9H0R6	528 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	ZNF304	Q9HCX3	659 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	MKKS	Q9NPJ1	570 aa	Predicted RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	RASSF1	Q9NS23	344 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	FGF21	Q9NSA1	209 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	MRPL39	Q9NYK5	338 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	CNOT2	Q9NZN8	540 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	PSORS1C1	Q9UIG5	152 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	TDRD6	O60522	2096 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	EML5	Q05BV3	1969 aa		11.71	□□□□□ -0.53
SHMT2-229	ENST00000557348	GOLGA4	Q13439	2230 aa	Known RBP	11.71	□□□□□ -0.54
SHMT2-229	ENST00000557348	EFCAB10	A6NFE3	127 aa		11.71	□□□□□ -0.54
SHMT2-229	ENST00000557348	SNTN	A6NMZ2	147 aa		11.71	□□□□□ -0.54
SHMT2-229	ENST00000557348	CLCA1	A8K7I4	914 aa		11.71	□□□□□ -0.54
SHMT2-229	ENST00000557348		H3BN98	237 aa		11.71	□□□□□ -0.54

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