RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RP2O75695 350 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 UBXN7O94888 489 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SIX6O95475 246 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 GYPBP06028 91 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 CELA3BP08861 270 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SLC35G4P0C7Q5 338 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 ITGAMP11215 1152 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 ATP1B2P14415 290 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 ADRA1AP35348 466 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 CCR6P51684 374 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 AKR1C2P52895 323 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 AP3S2P59780 193 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 AP1S1P61966 158 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 RPS25P62851 125 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 AKR1C1Q04828 323 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 CRYZQ08257 329 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 ELAVL2Q12926 359 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SLC5A12Q1EHB4 618 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 PRAMEF17Q5VTA0 474 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 FAM171BQ6P995 826 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 C17orf107Q6ZR85 190 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SSX6Q7RTT6 188 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 CCDC36Q8IYA8 594 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 PGBD5Q8N414 524 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 POMGNT2Q8NAT1 580 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 OR6F1Q8NGZ6 308 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 MRPL48Q96GC5 212 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 RIPOR3Q96MK2 946 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 C17orf62Q9BQA9 187 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 C7orf50Q9BRJ6 194 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 NDC1Q9BTX1 674 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 C1QTNF6Q9BXI9 259 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 ZBP1Q9H171 429 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 TRPV4Q9HBA0 871 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 C3orf14Q9HBI5 128 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 POPDC3Q9HBV1 291 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 TRIM36Q9NQ86 728 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 PCDHB16Q9NRJ7 776 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 FKBP14Q9NWM8 211 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 OSGIN1Q9UJX0 560 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 NDRG2Q9UN36 371 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 RASD1Q9Y272 281 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 NOP16Q9Y3C1 178 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SNX11Q9Y5W9 270 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 KNTC1P50748 2209 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 LOC285095A0A1B0GVY8 99 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 KANTRA0A1W2PQU2 76 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 TBC1D3BA6NDS4 549 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SLC38A8A6NNN8 435 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 FAM171A2A8MVW0 826 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 OR10H2O60403 315 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 KCNK5O95279 499 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 FARS2O95363 451 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 VNN2O95498 520 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 PEX11BO96011 259 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 M6PRP20645 277 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 NT5EP21589 574 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 IL32P24001 234 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 MAPK9P45984 424 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 GATMP50440 423 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 WNT4P56705 351 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 FXYD6P3P58550 94 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 RRAS2P62070 204 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 HBA1P69905 142 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 TDGQ13569 410 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 USF2Q15853 346 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 HES5Q5TA89 166 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 RFLNAQ6ZTI6 216 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 C6orf120Q7Z4R8 191 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 CPOQ8IVL8 374 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SLC39A11Q8N1S5 342 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 Q8N1Y9 231 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 DEFB123Q8N688 67 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 IL17RDQ8NFM7 739 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 OR5D16Q8NGK9 328 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 LKAAEAR1Q8TD35 194 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 ACOT12Q8WYK0 555 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 TESCQ96BS2 214 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 NXPE2Q96DL1 559 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 MRPL38Q96DV4 380 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 MICU1Q9BPX6 476 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 MACROD1Q9BQ69 325 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 NTMT1Q9BV86 223 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SYNPO2LQ9H987 977 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 SLC6A20Q9NP91 592 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 ZDHHC4Q9NPG8 344 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 MRPL17Q9NRX2 175 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 THSD1Q9NS62 852 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 TXNL4BQ9NX01 149 aaKnown RBP5.13□□□□□ -1.59
LIMA1-203ENST00000547825 OARD1Q9Y530 152 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 PCDHGB2Q9Y5G2 931 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 ATP23Q9Y6H3 246 aa5.13□□□□□ -1.59
LIMA1-203ENST00000547825 METTL21EPA6NDL7 271 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 PRAMEF25A6NGN4 478 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LRRC72A6NJI9 287 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 B4DXG7 233 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LRRN3E7EW58 273 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 M0R036 132 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 LGALS8O00214 317 aa5.12□□□□□ -1.59
LIMA1-203ENST00000547825 ARPC1BO15143 372 aaKnown RBP5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms