RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 FAM53CQ9NYF3 392 aa7.58□□□□□ -1.2
USP28-215ENST00000545608 SH3BP4Q9P0V3 963 aa7.58□□□□□ -1.2
USP28-215ENST00000545608 NTMQ9P121 344 aa7.58□□□□□ -1.2
USP28-215ENST00000545608 HRNRQ86YZ3 2850 aaPredicted RBP7.58□□□□□ -1.2
USP28-215ENST00000545608 FLNAP21333 2647 aaKnown RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 A0A087WZY1 265 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 A0A0J9YW62 118 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 SMIM23A6NLE4 172 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 H7C1Q1 480 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 COPEO14579 308 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 AZIN1O14977 448 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 ADAMDEC1O15204 470 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 SS18L1O75177 396 aaPredicted RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 KCNK2O95069 426 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 PLAUP00749 431 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 HEXAP06865 529 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 NGFRP08138 427 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 LINC00032P0C843 101 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 FCGR2AP12318 317 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 SNRPBP14678 240 aaKnown RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 IL11P20809 199 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 ADH6P28332 368 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 RAC1P63000 192 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 RPL38P63173 70 aaKnown RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 SLC18A2Q05940 514 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 PDE7AQ13946 482 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 CD226Q15762 336 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 VPS26BQ4G0F5 336 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 EXOSC6Q5RKV6 272 aaKnown RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 CCNJQ5T5M9 372 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 CPTPQ5TA50 214 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 LIPMQ5VYY2 423 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 MFSD12Q6NUT3 480 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 PRSS57Q6UWY2 283 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 STAC2Q6ZMT1 411 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 SZRD1Q7Z422 152 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 YTHDF3Q7Z739 585 aaKnown RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 TDRPQ86YL5 185 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 WDR75Q8IWA0 830 aaKnown RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 CNPY4Q8N129 248 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 C4orf33Q8N1A6 199 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 GTPBP8Q8N3Z3 284 aaPredicted RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 OR6Y1Q8NGX8 325 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 OR6K3Q8NGY3 331 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 OR2V1Q8NHB1 315 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 ZFP28Q8NHY6 868 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 ZBED6CLQ96FA7 236 aaPredicted RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 PERPQ96FX8 193 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 SH3YL1Q96HL8 342 aaPredicted RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 GMPPAQ96IJ6 420 aaPredicted RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 COX4I2Q96KJ9 171 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 RNF145Q96MT1 663 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 CCL19Q99731 98 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 CCT7Q99832 543 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 TMEM185BQ9H7F4 350 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 YY1AP1Q9H869 796 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 SIRT3Q9NTG7 399 aaPredicted RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 ACSS1Q9NUB1 689 aaPredicted RBP7.57□□□□□ -1.2
USP28-215ENST00000545608 EMC9Q9Y3B6 208 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 DNAJC15Q9Y5T4 150 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 ARID1AO14497 2285 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 ABCA2Q9BZC7 2435 aa7.57□□□□□ -1.2
USP28-215ENST00000545608 FN1P02751 2386 aaKnown RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 C7orf72A4D263 438 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 TRIM64A6NGJ6 449 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 TRIM64BA6NI03 449 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 TMEM233B4DJY2 109 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 TNFSF11O14788 317 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 SMAD7O15105 426 aaKnown RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 LSM1O15116 133 aaKnown RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 OIP5O43482 229 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 EFNA2O43921 213 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 TRIM13O60858 407 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 SYNGR4O95473 234 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 PLGP00747 810 aaPredicted RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 CHRNGP07510 517 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 ALOX5P09917 674 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 ARAFP10398 606 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 ZNF17P17021 662 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 KRT4P19013 534 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 SHC1P29353 583 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 CTBP2P56545 445 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 PCLAFQ15004 111 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 PLPPR5Q32ZL2 321 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 UGT3A2Q3SY77 523 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 GALNTL6Q49A17 601 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 BEX5Q5H9J7 111 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 KANK2Q63ZY3 851 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 ZCCHC12Q6PEW1 402 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 C20orf204Q6ZNR8 217 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 RNF165Q6ZSG1 346 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 COX18Q8N8Q8 333 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 B4GALNT2Q8NHY0 566 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 ACTRT2Q8TDY3 377 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 NUDT8Q8WV74 236 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 UBLCP1Q8WVY7 318 aaPredicted RBP7.56□□□□□ -1.2
USP28-215ENST00000545608 IGFBPL1Q8WX77 278 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 ROBO4Q8WZ75 1007 aa7.56□□□□□ -1.2
USP28-215ENST00000545608 OSTF1Q92882 214 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms