RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 BRINP1O60477 761 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 HPGDSO60760 199 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ITGA10O75578 1167 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ARL6IP5O75915 188 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 PEPDP12955 493 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 UGT2B7P16662 529 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 DRD5P21918 477 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 HNRNPA2B1P22626 353 aaKnown RBP12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ACTR1BP42025 376 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 CLDN20P56880 219 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ACTR1AP61163 376 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ACTA2P62736 377 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ACTG2P63267 376 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 LSM11P83369 360 aaKnown RBP eCLIP12.11□□□□□ -0.47
CPSF7-223ENST00000544669 FOXK2Q01167 660 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 IFITM2Q01629 132 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 LGALS3BPQ08380 585 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ILF3Q12906 894 aaKnown RBP eCLIP12.11□□□□□ -0.472e-6■■■■□ 21.5
CPSF7-223ENST00000544669 RUNX2Q13950 521 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ANGPT1Q15389 498 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 EOGTQ5NDL2 527 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 OLIG3Q7RTU3 272 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 CACUL1Q86Y37 369 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 GATAD2AQ86YP4 633 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 FAM20CQ8IXL6 584 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 CMIPQ8IY22 773 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ADAMTS18Q8TE60 1221 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 SIPA1Q96FS4 1042 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 IFT27Q9BW83 186 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 CYSLTR2Q9NS75 346 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 COPZ2Q9P299 210 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 ZNF624Q9P2J8 865 aaPredicted RBP12.11□□□□□ -0.47
CPSF7-223ENST00000544669 NDRG2Q9UN36 371 aaKnown RBP12.11□□□□□ -0.47
CPSF7-223ENST00000544669 CSNK1G3Q9Y6M4 447 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 CCDC88CQ9P219 2028 aa12.11□□□□□ -0.47
CPSF7-223ENST00000544669 STATHP02808 62 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 THY1P04216 161 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 SLC35E2P0CK97 266 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 HOXB2P14652 356 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 NT5EP21589 574 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 AKT2P31751 481 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 KIR2DL3P43628 341 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 ZNF791Q3KP31 576 aaPredicted RBP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 MRPL2Q5T653 305 aaKnown RBP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 PYHIN1Q6K0P9 492 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 POMGNT2Q8NAT1 580 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 HOXB13Q92826 284 aaPredicted RBP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 ZNF578Q96N58 590 aaPredicted RBP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 TEAD3Q99594 435 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 C7orf50Q9BRJ6 194 aaKnown RBP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 PRR14Q9BWN1 585 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 MKRN2Q9H000 416 aaKnown RBP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 TMEM165Q9HC07 324 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 DIABLOQ9NR28 239 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 ABRACLQ9P1F3 81 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 TEKT2Q9UIF3 430 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 YARS2Q9Y2Z4 477 aaKnown RBP12.1□□□□□ -0.47
CPSF7-223ENST00000544669 HS3ST3A1Q9Y663 406 aa12.1□□□□□ -0.47
CPSF7-223ENST00000544669 HTTP42858 3142 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 KIR2DS5A0A0G2JLQ3 304 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 A0A0G2JNG1 304 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 A0A1B0GTQ1 180 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 KIR2DS3K7RE56 304 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 SSX4O60224 188 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 PPM1BO75688 479 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 GATBO75879 557 aaKnown RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 NKX2-2O95096 273 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 APOL3O95236 402 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 ZIC2O95409 532 aaPredicted RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 DHFRP00374 187 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 CA3P07451 260 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 SAGP10523 405 aaPredicted RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 PSKH1P11801 424 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 HOXB3P14651 431 aaPredicted RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 ALAS2P22557 587 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 APEX1P27695 318 aaKnown RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 MAP3K8P41279 467 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 PITPNBP48739 271 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 NRG3P56975 720 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 RPS7P62081 194 aaKnown RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 SIM1P81133 766 aaPredicted RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 MRPS21P82921 87 aaKnown RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 BIKQ13323 160 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 KIR2DS5Q14953 304 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 PRRT3Q5FWE3 981 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 SHFQ7M4L6 423 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 HMGN2P46Q86SG4 172 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 SYS1Q8N2H4 156 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 LSMEM1Q8N8F7 131 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 SLC37A3Q8NCC5 494 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 C7orf57Q8NEG2 295 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 LILRB4Q8NHJ6 448 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 FLVCR1-AS1Q8TAF5 88 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 BAHD1Q8TBE0 780 aaPredicted RBP12.09□□□□□ -0.47
CPSF7-223ENST00000544669 UBASH3BQ8TF42 649 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 OR1E3Q8WZA6 343 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 G6PC3Q9BUM1 346 aa12.09□□□□□ -0.47
CPSF7-223ENST00000544669 MRI1Q9BV20 369 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms