RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	CD247	P20963	164 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	NME2	P22392	152 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	ELAVL4	P26378	380 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	MSX1	P28360	303 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	DNASE1L1	P49184	302 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	TNFSF10	P50591	281 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	P2RX1	P51575	399 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	ZNF41	P51814	821 aa	Predicted RBP	10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	GPR85	P60893	370 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	COPZ1	P61923	177 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	KCNC4	Q03721	635 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	CBFB	Q13951	182 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	CD226	Q15762	336 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	DUSP7	Q16829	419 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	ST3GAL2	Q16842	350 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	C19orf48	Q6RUI8	117 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	ENPP6	Q6UWR7	440 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	DEF8	Q6ZN54	512 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	ASB18	Q6ZVZ8	466 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	GALNTL5	Q7Z4T8	443 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	VTCN1	Q7Z7D3	282 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	CYP4Z1	Q86W10	505 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	CARM1	Q86X55	608 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	GRAMD2A	Q8IUY3	354 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	OR10Q1	Q8NGQ4	319 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	ZNF563	Q8TA94	476 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	SLC35B4	Q969S0	331 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	TMEM41A	Q96HV5	264 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	CNTNAP3B	Q96NU0	1288 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	CNTNAP3	Q9BZ76	1288 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	LAT2	Q9GZY6	243 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	PRORY	Q9H606	182 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	MAGIX	Q9H6Y5	334 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	SH2D2A	Q9NP31	389 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	EXOSC3	Q9NQT5	275 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	DNAJB12	Q9NXW2	375 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	SELENON	Q9NZV5	590 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	TES	Q9UGI8	421 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	DKKL1	Q9UK85	242 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	CARD8	Q9Y2G2	431 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	FAM32A	Q9Y421	112 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	FREM3	P0C091	2139 aa		10.87	□□□□□ -0.67
DDB1-223	ENST00000543658	NCKAP5	O14513	1909 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	TCRBV5S2	A0A599	114 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	C2orf72	A6NCS6	295 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	ACOT7	O00154	380 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	SNPH	O15079	494 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	PEX1	O43933	1283 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	TPST1	O60507	370 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	LGI1	O95970	557 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	LINGO3	P0C6S8	592 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	FAM87A	P0C7U9	286 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	SFTPC	P11686	197 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	PGC	P20142	388 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	RYK	P34925	604 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	PTGDS	P41222	190 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	MEOX1	P50221	254 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	CRYBA2	P53672	197 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	SUMO3	P55854	103 aa	Predicted RBP	10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	ACTR3	P61158	418 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	ZNF117	Q03924	483 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	ZNF169	Q14929	603 aa	Predicted RBP	10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	TOMM20	Q15388	145 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	NRF1	Q16656	503 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	COL28A1	Q2UY09	1125 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	NDUFAF6	Q330K2	333 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	GLIPR1L2	Q4G1C9	344 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	FNDC7	Q5VTL7	733 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	OR5M10	Q6IEU7	315 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	IGFL3	Q6UXB1	125 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	APOOL	Q6UXV4	268 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	PLEKHM3	Q6ZWE6	761 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	ZDHHC21	Q8IVQ6	265 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	CLIP4	Q8N3C7	705 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	CATSPER1	Q8NEC5	780 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	OR2M7	Q8NG81	312 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	GPR32P1	Q8NGA4	272 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	DUSP19	Q8WTR2	217 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	RNF138	Q8WVD3	245 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	CNOT9	Q92600	299 aa	Known RBP	10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	SCMH1	Q96GD3	660 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	CRELD1	Q96HD1	420 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	ARHGDIG	Q99819	225 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	RLIM	Q9NVW2	624 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	PCDHGB6	Q9Y5F9	930 aa		10.86	□□□□□ -0.67
DDB1-223	ENST00000543658	FRY	Q5TBA9	3013 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	ANKRD11	Q6UB99	2663 aa	Predicted RBP	10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	TCRBV3S1	A0A5B6	114 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	ANKUB1	A6NFN9	424 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	FRS3	O43559	492 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	GKN3P	P0CG01	181 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	RAP2A	P10114	183 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	TNFRSF1B	P20333	461 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	OR1E2	P47887	323 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	SKP2	Q13309	424 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	CCNI	Q14094	377 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	GANAB	Q14697	944 aa	Known RBP	10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	ZFP1	Q6P2D0	407 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	ZNF227	Q86WZ6	799 aa		10.85	□□□□□ -0.67
DDB1-223	ENST00000543658	PLCZ1	Q86YW0	608 aa		10.85	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms