RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 LRRC74AQ0VAA2 488 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 FOXF2Q12947 444 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 CTU2Q2VPK5 515 aaKnown RBP12.79□□□□□ -0.36
USP28-209ENST00000540925 FLYWCH1Q4VC44 716 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 CBLN3Q6UW01 205 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 ZNF527Q8NB42 609 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 B4GALNT2Q8NHY0 566 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 OIT3Q8WWZ8 545 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 ZBTB8AQ96BR9 441 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 ZNF524Q96C55 264 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 CHMP6Q96FZ7 201 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 INPP5KQ9BT40 448 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 SLC6A13Q9NSD5 602 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 ARGLU1Q9NWB6 273 aaPredicted RBP12.79□□□□□ -0.36
USP28-209ENST00000540925 VDAC3Q9Y277 283 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 DTNAQ9Y4J8 743 aa12.79□□□□□ -0.36
USP28-209ENST00000540925 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 CCDC154A6NI56 674 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 HMGN4O00479 90 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 KIAA0513O60268 411 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 STX11O75558 287 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 SLC22A3O75751 556 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 UGT2B17O75795 530 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 TNFSF13O75888 250 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 IL6P05231 212 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 TMIGD3P0DMS9 266 aaPredicted RBP12.78□□□□□ -0.36
USP28-209ENST00000540925 NID1P14543 1247 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 HPGDP15428 266 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 OPRM1P35372 400 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 MVDP53602 400 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 CASP9P55211 416 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 SUMO3P55854 103 aaPredicted RBP12.78□□□□□ -0.36
USP28-209ENST00000540925 PPP2R2AP63151 447 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 GUSBP1Q15486 140 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 NXNQ6DKJ4 435 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 MSANTD1Q6ZTZ1 278 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 OLIG3Q7RTU3 272 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 MEIOBQ8N635 442 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 FAM71CQ8NEG0 241 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 LRRC8CQ8TDW0 803 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 ARSGQ96EG1 525 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 SH3YL1Q96HL8 342 aaPredicted RBP12.78□□□□□ -0.36
USP28-209ENST00000540925 MARK4Q96L34 752 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 OR52E6Q96RD3 313 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 SLC35A5Q9BS91 424 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 SFXN3Q9BWM7 321 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 POLE3Q9NRF9 147 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 KCNN3Q9UGI6 736 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 ZNF175Q9Y473 711 aa12.78□□□□□ -0.36
USP28-209ENST00000540925 ZFHX3Q15911 3703 aa12.77□□□□□ -0.36
USP28-209ENST00000540925 H3BML4 177 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 ADAMDEC1O15204 470 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 UBDO15205 165 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 EFNA2O43921 213 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 GMFGO60234 142 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 AGR2O95994 175 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 CRHP06850 196 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 ZCCHC18P0CG32 403 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 OR12D1P0DN82 309 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 HOXB9P17482 250 aaPredicted RBP12.77□□□□□ -0.37
USP28-209ENST00000540925 IDH3AP50213 366 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 P2RX1P51575 399 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 TXNL4AP83876 142 aaKnown RBP12.77□□□□□ -0.37
USP28-209ENST00000540925 PLAURQ03405 335 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 SKP2Q13309 424 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 MAPK14Q16539 360 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 SLC25A53Q5H9E4 307 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 PDZK1Q5T2W1 519 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 TYW3Q6IPR3 259 aaKnown RBP12.77□□□□□ -0.37
USP28-209ENST00000540925 TNFAIP8L2Q6P589 184 aaPredicted RBP12.77□□□□□ -0.37
USP28-209ENST00000540925 FRRS1Q6ZNA5 592 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 UBQLNLQ8IYU4 475 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 TOR1AIP2Q8NFQ8 470 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 OR9I1Q8NGQ6 314 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 PHOSPHO1Q8TCT1 267 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 GPR119Q8TDV5 335 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 CKAP2Q8WWK9 683 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 STON2Q8WXE9 905 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 FIG4Q92562 907 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 RAB8BQ92930 207 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 RNASE6Q93091 150 aaKnown RBP12.77□□□□□ -0.37
USP28-209ENST00000540925 LURAP1Q96LR2 239 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 PANX1Q96RD7 426 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 ZBTB18Q99592 522 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 RNF122Q9H9V4 155 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 EXD2Q9NVH0 621 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 MKLN1Q9UL63 735 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 CARD8Q9Y2G2 431 aa12.77□□□□□ -0.37
USP28-209ENST00000540925 SETD2Q9BYW2 2564 aaPredicted RBP12.77□□□□□ -0.37
USP28-209ENST00000540925 A0A1W2PNV4 684 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 SERINC4A6NH21 518 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 SLC22A20A6NK97 555 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 H3BNH8 94 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 EIF4E2O60573 245 aaKnown RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 DIAPH2O60879 1101 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 IL11P20809 199 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 ELK4P28324 431 aa12.76□□□□□ -0.37
USP28-209ENST00000540925 CHI3L1P36222 383 aaPredicted RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 EIF1P41567 113 aaKnown RBP12.76□□□□□ -0.37
USP28-209ENST00000540925 MAGEA8P43361 318 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms