RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 SLAMF8Q9P0V8 285 aa16.53■□□□□ 0.24
SNRPA1-203ENST00000540017 ICAM5Q9UMF0 924 aa16.53■□□□□ 0.24
SNRPA1-203ENST00000540017 PCDHB14Q9Y5E9 798 aa16.53■□□□□ 0.24
SNRPA1-203ENST00000540017 CACNA1CQ13936 2221 aa16.53■□□□□ 0.24
SNRPA1-203ENST00000540017 CELSR2Q9HCU4 2923 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 A0A0G2JND7 137 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 CD8B2A6NJW9 211 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 FAM90A27PA6NNH2 459 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 NR5A2O00482 541 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 KIAA0513O60268 411 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 H6PDO95479 791 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 ANP32DO95626 131 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 NCF2P19878 526 aaPredicted RBP16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 CLDN20P56880 219 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 CHRNEQ04844 493 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 SF3A3Q12874 501 aaKnown RBP eCLIP16.52■□□□□ 0.249e-7■■■■■ 38.9
SNRPA1-203ENST00000540017 SQLEQ14534 574 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 BCL2A1Q16548 175 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 PLPPR5Q32ZL2 321 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 PAGE3Q5JUK9 113 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 C6orf10Q5SRN2 563 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 LACC1Q8IV20 430 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 UBQLNLQ8IYU4 475 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 C9orf106Q8NAJ2 232 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 POC1BQ8TC44 478 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 SPDL1Q96EA4 605 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 ARSGQ96EG1 525 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 PIGQQ9BRB3 760 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 QRSL1Q9H0R6 528 aaKnown RBP16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 TPT1P8Q9HAU6 139 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 WDR45Q9Y484 360 aa16.52■□□□□ 0.24
SNRPA1-203ENST00000540017 MBD3L4A6NDZ8 208 aaPredicted RBP16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 MBD3L3A6NE82 208 aaPredicted RBP16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 SERINC4A6NH21 518 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 MBD3L5A6NJ08 208 aaPredicted RBP16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 CLCA1A8K7I4 914 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 H3BML4 177 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 ATP8B1O43520 1251 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 BCAS1O75363 584 aaPredicted RBP16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 KRT75O95678 551 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 CHRM4P08173 479 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 GUSBP08236 651 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 LINGO3P0C6S8 592 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 PEPDP12955 493 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 ETFAP13804 333 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 POU3F2P20265 443 aaPredicted RBP16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 PSMA4P25789 261 aaKnown RBP16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 TIMP3P35625 211 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 P2RX1P51575 399 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 TFF3Q07654 80 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 TOMM34Q15785 309 aaPredicted RBP16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 GPAT3Q53EU6 434 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 POMZP3Q6PJE2 187 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 MSRB3Q8IXL7 192 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 MBD3L2Q8NHZ7 208 aaPredicted RBP16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 TMEM120AQ9BXJ8 343 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 SLC38A1Q9H2H9 487 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 RUBCNLQ9H714 662 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 CALHM2Q9HA72 323 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 HHATLQ9HCP6 504 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 POLE3Q9NRF9 147 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 SLC25A37Q9NYZ2 338 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 CLCF1Q9UBD9 225 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 L3MBTL1Q9Y468 752 aa16.51■□□□□ 0.23
SNRPA1-203ENST00000540017 A0A087WZY1 265 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 H3BNH8 94 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 GTPBP1O00178 669 aaKnown RBP16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 UBL4AP11441 157 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 ZNF41P51814 821 aaPredicted RBP16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 ZNF136P52737 540 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 PLAURQ03405 335 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 SKP2Q13309 424 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 SF3B4Q15427 424 aaKnown RBP eCLIP16.5■□□□□ 0.232e-9■■■■■ 35.9
SNRPA1-203ENST00000540017 ZNF619Q8N2I2 560 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 GTPBP8Q8N3Z3 284 aaPredicted RBP16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 GPR119Q8TDV5 335 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 RNF145Q96MT1 663 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 TRNT1Q96Q11 434 aaKnown RBP16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 UCN2Q96RP3 112 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 SIKE1Q9BRV8 207 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 CCDC134Q9H6E4 229 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 TMEM45AQ9NWC5 275 aa16.5■□□□□ 0.23
SNRPA1-203ENST00000540017 A0A096LPI6 279 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 C7orf72A4D263 438 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 CLDN24A6NM45 220 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 LINC01387J3KSC0 135 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 ZNF264O43296 627 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 SEC14L5O43304 696 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 EFNA2O43921 213 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 OPN1LWP04000 364 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 VIMP08670 466 aaKnown RBP16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 ZNF17P17021 662 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 IL11P20809 199 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 CRATP43155 626 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 IRX1P78414 480 aaPredicted RBP16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 TXNL4AP83876 142 aaKnown RBP16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 FGFBP1Q14512 234 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 LRIF1Q5T3J3 769 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 GGNQ86UU5 652 aa16.49■□□□□ 0.23
SNRPA1-203ENST00000540017 SMPDL3BQ92485 455 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms