RNA–Protein interactions for RNA: ENST00000536782.2

TNFRSF1B-204, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1B, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-204ENST00000536782 SMAD7O15105 426 aaKnown RBP17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 HMGN2P05204 90 aaKnown RBP17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TUBBP07437 444 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 FGF4P08620 206 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PABPC4LP0CB38 370 aaKnown RBP17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 BCKDHAP12694 445 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 HPCAL1P37235 193 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 EIF1P41567 113 aaKnown RBP17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CARD18P57730 90 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CD226Q15762 336 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ZNF704Q6ZNC4 412 aaPredicted RBP17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TWIST2Q8WVJ9 160 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 REXO5Q96IC2 774 aaKnown RBP17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 STACQ99469 402 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ACTR6Q9GZN1 396 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 OR10A4Q9H209 315 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PIGUQ9H490 435 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 C12orf49Q9H741 205 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ANKZF1Q9H8Y5 726 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 SIRT3Q9NTG7 399 aaPredicted RBP17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ATP6V1HQ9UI12 483 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 GPR52Q9Y2T5 361 aa17.58■□□□□ 0.4
TNFRSF1B-204ENST00000536782 HIVEP2P31629 2446 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TRIM64A6NGJ6 449 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TRIM64BA6NI03 449 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TMEM233B4DJY2 109 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 SCAMP2O15127 329 aaKnown RBP17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 LINGO3P0C6S8 592 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ATP6V1C1P21283 382 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 MAPK1P28482 360 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 AGTR1P30556 359 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 RPL3P39023 403 aaKnown RBP17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PTH2RP49190 550 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ZNF117Q03924 483 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 LASP1Q14847 261 aaKnown RBP17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 MTERF4Q7Z6M4 381 aaKnown RBP17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 WFDC8Q8IUA0 241 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PHOSPHO1Q8TCT1 267 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 NUDT8Q8WV74 236 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TMEM171Q8WVE6 324 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CDS1Q92903 461 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PLPPR2Q96GM1 343 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 KLHDC3Q9BQ90 382 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 EML4Q9HC35 981 aaKnown RBP17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TIGARQ9NQ88 270 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 GIN1Q9NXP7 522 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TRAF6Q9Y4K3 522 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 SNX8Q9Y5X2 465 aa17.57■□□□□ 0.4
TNFRSF1B-204ENST00000536782 SONP18583 2426 aaKnown RBP17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PIP5K1BO14986 540 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 NPHS1O60500 1241 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CHRNGP07510 517 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PSMB1P20618 241 aaKnown RBP17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ELK4P28324 431 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 SFTPDP35247 375 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 FOXF1Q12946 379 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 UGT3A2Q3SY77 523 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ZNF527Q8NB42 609 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 OR7A2PQ8NGA2 310 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 IGFBPL1Q8WX77 278 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ROBO4Q8WZ75 1007 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PPP3R2Q96LZ3 170 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 HOXD1Q9GZZ0 328 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CXorf56Q9H5V9 222 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 COL6A5A8TX70 2615 aa17.56■□□□□ 0.4
TNFRSF1B-204ENST00000536782 GJE1A6NN92 205 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TMCC2O75069 709 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 SLU7O95391 586 aaKnown RBP17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 NUDT14O95848 222 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PLAUP00749 431 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 LAMP1P11279 417 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PAX1P15863 534 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ADH6P28332 368 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ALDH3A1P30838 453 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CCT3P49368 545 aaKnown RBP17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 RNPS1Q15287 305 aaKnown RBP17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ZNF239Q16600 458 aaKnown RBP17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ARL13AQ5H913 290 aaPredicted RBP17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TMEM201Q5SNT2 666 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CDC73Q6P1J9 531 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 STEAP2Q8NFT2 490 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 OR56A1Q8NGH5 318 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ADAMTS15Q8TE58 950 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 RNF128Q8TEB7 428 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CPNE4Q96A23 557 aaPredicted RBP17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 APOPT1Q96IL0 206 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ACTRT3Q9BYD9 372 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ATAD3AQ9NVI7 634 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 MKS1Q9NXB0 559 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 FAF1Q9UNN5 650 aaPredicted RBP17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ATRQ13535 2644 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 FREM1Q5H8C1 2179 aa17.55■□□□□ 0.4
TNFRSF1B-204ENST00000536782 TLDC2A0PJX2 215 aa17.54■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ESPNB1AK53 854 aa17.54■□□□□ 0.4
TNFRSF1B-204ENST00000536782 H3BNH8 94 aa17.54■□□□□ 0.4
TNFRSF1B-204ENST00000536782 ZNF195O14628 629 aa17.54■□□□□ 0.4
TNFRSF1B-204ENST00000536782 HS3ST1O14792 307 aa17.54■□□□□ 0.4
TNFRSF1B-204ENST00000536782 PEX11AO75192 247 aa17.54■□□□□ 0.4
TNFRSF1B-204ENST00000536782 SOX30O94993 753 aa17.54■□□□□ 0.4
TNFRSF1B-204ENST00000536782 CNOT4O95628 575 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms