RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 STX7O15400 261 aaKnown RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 SMPD2O60906 423 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 SCGNO76038 276 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 PDHBP11177 359 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 RPA2P15927 270 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 PSMB1P20618 241 aaKnown RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 VDAC1P21796 283 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 IGHV1-2P23083 117 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 IGFBP5P24593 272 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 ADORA2BP29275 332 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 ACAA2P42765 397 aaKnown RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 OR1D4P47884 311 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 RPL29P47914 159 aaKnown RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 MEOX2P50222 304 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 PLK1P53350 603 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 AP3M2P53677 418 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 VLDLRP98155 873 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 KLHL30Q0D2K2 578 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 CAPRIN1Q14444 709 aaKnown RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 KIAA0040Q15053 153 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 CHI3L2Q15782 390 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 LRRC23Q53EV4 343 aaPredicted RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 ATAD3BQ5T9A4 648 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 ASPHD2Q6ICH7 369 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 SULT1C3Q6IMI6 304 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 ACSM5Q6NUN0 579 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 KCNIP4Q6PIL6 250 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 CBLN3Q6UW01 205 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 UTS2BQ765I0 119 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 C16orf62Q7Z3J2 963 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 TMEM179BQ7Z7N9 219 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 KIAA1328Q86T90 577 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 DHRSXQ8N5I4 330 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 OR2T33Q8NG76 320 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 TRMT10AQ8TBZ6 339 aaKnown RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 GTSF1Q8WW33 167 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 PSMG2Q969U7 264 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 SENP8Q96LD8 212 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 LINC00167Q96N53 147 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 KIR2DL4Q99706 377 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 CCSER1Q9C0I3 900 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 ZNF385DQ9H6B1 395 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 AGPAT5Q9NUQ2 364 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 VNN3Q9NY84 501 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 RNF14Q9UBS8 474 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 APOBEC3BQ9UH17 382 aaKnown RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 RPH3ALQ9UNE2 315 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 DUSP12Q9UNI6 340 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 COPS3Q9UNS2 423 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 SAMD4AQ9UPU9 718 aaKnown RBP2.02□□□□□ -2.09
CD44-238ENST00000534296 MAB21L2Q9Y586 359 aa2.02□□□□□ -2.09
CD44-238ENST00000534296 TNRQ92752 1358 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 IGLV8-61A0A075B6I0 122 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 HELTA6NFD8 242 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 PPIAL4DF5H284 164 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 H0YCG3 227 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 K7EPI3 171 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 OR7A17O14581 309 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 POLR2DO15514 142 aaKnown RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 TBX19O60806 448 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 ADCY5O95622 1261 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 MBD3O95983 291 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 HSPA5P11021 654 aaKnown RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 SOX6P35712 828 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 IFNAR2P48551 515 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 RPL8P62917 257 aaKnown RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 OC90Q02509 493 aaPredicted RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 CHRNB3Q05901 458 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 RIPPLY1Q0D2K3 151 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 PJVKQ0ZLH3 352 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 ARFRP1Q13795 201 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 DPYSL3Q14195 570 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 TAF7Q15545 349 aaPredicted RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 NDUFA9Q16795 377 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 ISXQ2M1V0 245 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 C2orf83Q53S99 150 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 PAN3Q58A45 887 aaKnown RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 DNAJC21Q5F1R6 531 aaKnown RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 CFAP157Q5JU67 520 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 CELF3Q5SZQ8 465 aaKnown RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 LIPNQ5VXI9 398 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 ATL3Q6DD88 541 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 TMEM225Q6GV28 225 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 FAHD2BQ6P2I3 314 aaPredicted RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 FAM43BQ6ZT52 329 aaPredicted RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 FRA10AC1Q70Z53 315 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 LHFPL4Q7Z7J7 247 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 C9orf40Q8IXQ3 194 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 CCDC65Q8IXS2 484 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 SYT14Q8NB59 555 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 RAET1EQ8TD07 263 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 NEIL2Q969S2 332 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 ADIPOR1Q96A54 375 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 C18orf25Q96B23 403 aaPredicted RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 FAHD2AQ96GK7 314 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 SH3YL1Q96HL8 342 aaPredicted RBP2.01□□□□□ -2.09
CD44-238ENST00000534296 TTC25Q96NG3 672 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 SMIM14Q96QK8 99 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 RIT2Q99578 217 aa2.01□□□□□ -2.09
CD44-238ENST00000534296 TUBGCP2Q9BSJ2 902 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms