RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 A0A1B0GTQ1 180 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SH3D21A4FU49 640 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 GLOD5A6NK44 160 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 WASHC1A8K0Z3 465 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RFXANKO14593 260 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ACOT8O14734 319 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PROM1O43490 865 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SCN2BO60939 215 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 DNAJB6O75190 326 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CRTAPO75718 401 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 BCAS2O75934 225 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 ANP32DO95626 131 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 C6orf47O95873 294 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CLEC3BP05452 202 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ABCB1P08183 1280 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 SP9P0CG40 484 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 GIMD1P0DJR0 217 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 MED14OSP0DP75 135 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PRG2P13727 222 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 HSD17B1P14061 328 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 NCK1P16333 377 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 HOXB9P17482 250 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 IL1RNP18510 177 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 HRH2P25021 359 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ATP5A1P25705 553 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 EPHA8P29322 1005 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 PTPN6P29350 595 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ALDH4A1P30038 563 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SERPINB1P30740 379 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PTGER1P34995 402 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 FASLGP48023 281 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ARRB1P49407 418 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 GSK3BP49841 420 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CASP9P55211 416 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 EEFSECP57772 596 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 ACTR3P61158 418 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SSTP61278 116 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RPP30P78346 268 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 LIPEQ05469 1076 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 KLC1Q07866 573 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RGS1Q08116 209 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CHAF1BQ13112 559 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SLAMF1Q13291 335 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 GAB1Q13480 694 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ANGPT1Q15389 498 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SEC23BQ15437 767 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 DUOXA1Q1HG43 343 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 HLA-BQ31612 363 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ADPRMQ3LIE5 342 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 TBRG1Q3YBR2 411 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 Q3ZCU0 254 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 TMEM35AQ53FP2 167 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RUNDC3AQ59EK9 446 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 LRIF1Q5T3J3 769 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 FAM69AQ5T7M9 428 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 OR4C11Q6IEV9 310 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 TRIM40Q6P9F5 258 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 INO80CQ6PI98 192 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 PAPD4Q6PIY7 484 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 ZNF600Q6ZNG1 722 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ZNF621Q6ZSS3 439 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 MSANTD1Q6ZTZ1 278 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PTCHD4Q6ZW05 846 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RHOUQ7L0Q8 258 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PRSS41Q7RTY9 318 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ARPINQ7Z6K5 226 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PXKQ7Z7A4 578 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 GPR180Q86V85 440 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 C1QL4Q86Z23 238 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 TICAM1Q8IUC6 712 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 C10orf111Q8N326 155 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 TMEM132CQ8N3T6 1108 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ACOT4Q8N9L9 421 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 FAM47BQ8NA70 645 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 TRPV3Q8NET8 790 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 BHLHE22Q8NFJ8 381 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 TTLQ8NG68 377 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 OR2L5Q8NG80 312 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 OR8J2Q8NGG1 315 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 OR4A15Q8NGL6 344 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 OR10A6Q8NH74 314 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 FAM110BQ8TC76 370 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 SLC22A8Q8TCC7 542 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 PNPT1Q8TCS8 783 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 STARD8Q92502 1023 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 NCSTNQ92542 709 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RERGQ96A58 199 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 EXOSC8Q96B26 276 aaKnown RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 PPCDCQ96CD2 204 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 TM4SF18Q96CE8 201 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 COQ8BQ96D53 544 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 RNF31Q96EP0 1072 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CMTM3Q96MX0 182 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 CCDC115Q96NT0 180 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 ANKRD27Q96NW4 1050 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 QRFPRQ96P65 431 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 OR2A5Q96R48 311 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 NEU1Q99519 415 aa3.88□□□□□ -1.79
CD44-226ENST00000527889 HOPXQ9BPY8 73 aaPredicted RBP3.88□□□□□ -1.79
CD44-226ENST00000527889 MAPKAP1Q9BPZ7 522 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms