RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 FN3KRPQ9HA64 309 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 CDH9Q9ULB4 789 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 NPIPA1Q9UND3 350 aa5.79□□□□□ -1.48
NUP54-215ENST00000514313 TRAV9-2A0A087WT02 112 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 LRP5LA4QPB2 252 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 E9PQ18 207 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 ZNF253O75346 499 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 LRATO95237 230 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 HPP00738 406 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 ALOX5P09917 674 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 ZNF883P0CG24 379 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 RNF224P0DH78 156 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 PNMTP11086 282 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 DBTP11182 482 aaKnown RBP5.78□□□□□ -1.48
NUP54-215ENST00000514313 HMGCS2P54868 508 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 NDUFA9Q16795 377 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 PHYHD1Q5SRE7 291 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 CEP85LQ5SZL2 805 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 ZYG11AQ6WRX3 759 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 C15orf54Q8N8G6 183 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 OR10A7Q8NGE5 316 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 FBXO32Q969P5 355 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 NT5C3BQ969T7 300 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 OR5B2Q96R09 309 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 KRTAP1-5Q9BYS1 174 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 OPN3Q9H1Y3 402 aaPredicted RBP5.78□□□□□ -1.48
NUP54-215ENST00000514313 HYPKQ9NX55 129 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 IMPAD1Q9NX62 359 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 AIPL1Q9NZN9 384 aa5.78□□□□□ -1.48
NUP54-215ENST00000514313 TDRD15B5MCY1 1934 aaKnown RBP5.78□□□□□ -1.48
NUP54-215ENST00000514313 KRTAP16-1A8MUX0 517 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 E9PAM4 449 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 FCN1O00602 326 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 TAPBPO15533 448 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 N4BP1O75113 896 aaKnown RBP5.77□□□□□ -1.49
NUP54-215ENST00000514313 KBTBD11O94819 623 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 SLC2A10O95528 541 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 SERPINA3P01011 423 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 IGHV3-13P01766 116 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 TPM2P07951 284 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 CD55P08174 381 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 LAMP1P11279 417 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 CEBPDP49716 269 aaPredicted RBP5.77□□□□□ -1.49
NUP54-215ENST00000514313 C1orf61Q13536 156 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 KCTD21Q4G0X4 260 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 TP53I3Q53FA7 332 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 METTL7BQ6UX53 244 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 GCNT7Q6ZNI0 430 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 NLRP9Q7RTR0 991 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 SERPINA9Q86WD7 417 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 CLEC4FQ8N1N0 589 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 DHRSXQ8N5I4 330 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 ARNTL2Q8WYA1 636 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 ZBED6CLQ96FA7 236 aaPredicted RBP5.77□□□□□ -1.49
NUP54-215ENST00000514313 NPY6RQ99463 290 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 SOSTQ9BQB4 213 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 VPS33BQ9H267 617 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 LRRN3Q9H3W5 708 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 GLIPR2Q9H4G4 154 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 PNO1Q9NRX1 252 aaKnown RBP5.77□□□□□ -1.49
NUP54-215ENST00000514313 IL36GQ9NZH8 169 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 RASD1Q9Y272 281 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 L3MBTL1Q9Y468 752 aa5.77□□□□□ -1.49
NUP54-215ENST00000514313 CCDC169A6NNP5 214 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 EFCAB7A8K855 629 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 SLC17A2O00624 439 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 PHF1O43189 567 aaPredicted RBP5.76□□□□□ -1.49
NUP54-215ENST00000514313 SH3BGRLO75368 114 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 PIGRP01833 764 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 ACADSP16219 412 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 NCK1P16333 377 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 ELK3P41970 407 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 ERVPABLB-1P60509 514 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 VLDLRP98155 873 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 OC90Q02509 493 aaPredicted RBP5.76□□□□□ -1.49
NUP54-215ENST00000514313 NCBP1Q09161 790 aaKnown RBP5.76□□□□□ -1.49
NUP54-215ENST00000514313 CUL1Q13616 776 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 MCOLN2Q8IZK6 566 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 CSNK1A1LQ8N752 337 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 IL1F10Q8WWZ1 152 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 CCNL2Q96S94 520 aaPredicted RBP5.76□□□□□ -1.49
NUP54-215ENST00000514313 PSMB7Q99436 277 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 PNNQ9H307 717 aaKnown RBP5.76□□□□□ -1.49
NUP54-215ENST00000514313 KLK13Q9UKR3 277 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 TIMM10BQ9Y5J6 103 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 GON4LQ3T8J9 2241 aa5.76□□□□□ -1.49
NUP54-215ENST00000514313 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.75□□□□□ -1.49
NUP54-215ENST00000514313 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.75□□□□□ -1.49
NUP54-215ENST00000514313 XKRY2A2RUG3 117 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 H2AFZP0C0S5 128 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 CCT3P49368 545 aaKnown RBP5.75□□□□□ -1.49
NUP54-215ENST00000514313 IST1P53990 364 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 FCN2Q15485 313 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 SLC25A52Q3SY17 297 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 UFSP1Q6NVU6 142 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 HIPK1Q86Z02 1210 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 PPP1R16AQ96I34 528 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 NMRK1Q9NWW6 199 aa5.75□□□□□ -1.49
NUP54-215ENST00000514313 WRAP73Q9P2S5 460 aaPredicted RBP5.75□□□□□ -1.49
NUP54-215ENST00000514313 SCML2Q9UQR0 700 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms