RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TSC22D1Q15714 1073 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 TECRLQ5HYJ1 363 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 C6orf10Q5SRN2 563 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 LCTLQ6UWM7 567 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 GDPD3Q7L5L3 318 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 GALNTL5Q7Z4T8 443 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 MARVELD2Q8N4S9 558 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 C7orf26Q96N11 449 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 NTMT1Q9BV86 223 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 UCK1Q9HA47 277 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 NPIPA1Q9UND3 350 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 DLGAP4Q9Y2H0 992 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 SPACA6W5XKT8 324 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 ADAMTS20P59510 1910 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 PRR14LQ5THK1 2151 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 TOX3O15405 576 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 PRICKLE3O43900 615 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 GLRA3O75311 464 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 IPO13O94829 963 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 PIM1P11309 404 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 RAB3AP20336 220 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 RAB3BP20337 219 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 BGNP21810 368 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 SMSP52788 366 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 RPL38P63173 70 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 ARHGAP19Q14CB8 494 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 LINC00303Q3SY05 128 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 MEDAGQ5VYS4 303 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF793Q6ZN11 406 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 GPRIN3Q6ZVF9 776 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF843Q8N446 348 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 UBXN10Q96LJ8 280 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 FER1L6-AS2Q96M78 137 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 MRPL57Q9BQC6 102 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 PDCD10Q9BUL8 212 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 ABCB9Q9NP78 766 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 MIEF1Q9NQG6 463 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 NUDT4Q9NZJ9 180 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 TACC2O95359 2948 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 FREM3P0C091 2139 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 C17orf105B2RV13 164 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 TARM1B6A8C7 271 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 TRAPPC6AO75865 159 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 SCAF4O95104 1147 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 DHFRP00374 187 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF23P17027 643 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 SSTR4P31391 388 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 HNMTP50135 292 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 EFNA3P52797 238 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 TAS2R50P59544 299 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 FGL1Q08830 312 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 HSPB3Q12988 150 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 LTB4RQ15722 352 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 DNAL1Q4LDG9 190 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 FRG2Q64ET8 278 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 COX15Q7KZN9 410 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 RHOUQ7L0Q8 258 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 SYVN1Q86TM6 617 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 FJX1Q86VR8 437 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 DEFB107AQ8IZN7 70 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 FBXO27Q8NI29 283 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 AGAP4Q96P64 663 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 FRG2BQ96QU4 278 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 PAPOLGQ9BWT3 736 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 C1QTNF6Q9BXI9 259 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 MROQ9BYG7 248 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 OPN3Q9H1Y3 402 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 RPF2Q9H7B2 306 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 EVA1AQ9H8M9 152 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 SEMA3GQ9NS98 782 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 TAS2R7Q9NYW3 318 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 GMPPBQ9Y5P6 360 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 TENM4Q6N022 2769 aa7.32□□□□□ -1.24
LIMCH1-219ENST00000514096 USF3Q68DE3 2245 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 LRIT2A6NDA9 550 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 AKR7A2O43488 359 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 GATCO43716 136 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SORBS2O94875 1100 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 NDUFB7P17568 137 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 LBPP18428 481 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 MMP11P24347 488 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 RORAP35398 523 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SOAT1P35610 550 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SERPINB10P48595 397 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 KCNK10P57789 538 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 PSPHP78330 225 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 PWP1Q13610 501 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TRAM2Q15035 370 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 PLEKHN1Q494U1 663 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 AARDQ4LEZ3 155 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 TCTN3Q6NUS6 607 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ZNF544Q6NX49 715 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 C3orf33Q6P1S2 294 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 ZADH2Q8N4Q0 377 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 GATSQ8NAP1 163 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SMPDL3BQ92485 455 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 MS4A6EQ96DS6 147 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 PGM2Q96G03 612 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SERPINI1Q99574 410 aa7.31□□□□□ -1.24
LIMCH1-219ENST00000514096 SGPP1Q9BX95 441 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms